PATMuonProducer.cc

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//
//

#include "PhysicsTools/PatAlgos/plugins/PATMuonProducer.h"

#include "FWCore/MessageLogger/interface/MessageLogger.h"
#include "FWCore/ParameterSet/interface/FileInPath.h"
#include "FWCore/Utilities/interface/Exception.h"

#include "DataFormats/MuonReco/interface/Muon.h"
#include "DataFormats/MuonReco/interface/MuonFwd.h"
#include "DataFormats/MuonReco/interface/MuonSimInfo.h"

#include "DataFormats/TrackReco/interface/TrackToTrackMap.h"

#include "DataFormats/ParticleFlowCandidate/interface/IsolatedPFCandidateFwd.h"
#include "DataFormats/ParticleFlowCandidate/interface/IsolatedPFCandidate.h"
#include "DataFormats/PatCandidates/interface/PFIsolation.h"

#include "DataFormats/HepMCCandidate/interface/GenParticleFwd.h"
#include "DataFormats/HepMCCandidate/interface/GenParticle.h"

#include "DataFormats/Common/interface/Association.h"

#include "DataFormats/BeamSpot/interface/BeamSpot.h"
#include "DataFormats/VertexReco/interface/Vertex.h"

#include "FWCore/ParameterSet/interface/ConfigurationDescriptions.h"
#include "FWCore/ParameterSet/interface/ParameterSetDescription.h"
#include "FWCore/ParameterSet/interface/EmptyGroupDescription.h"

#include "TrackingTools/TransientTrack/interface/TransientTrackBuilder.h"
#include "TrackingTools/Records/interface/TransientTrackRecord.h"
#include "TrackingTools/TransientTrack/interface/TransientTrack.h"
#include "TrackingTools/IPTools/interface/IPTools.h"

#include "TMath.h"

#include "FWCore/Utilities/interface/transform.h"

#include "PhysicsTools/PatUtils/interface/MiniIsolation.h"
#include "PhysicsTools/PatAlgos/interface/MuonMvaEstimator.h"
#include "FWCore/ParameterSet/interface/FileInPath.h"
#include "JetMETCorrections/JetCorrector/interface/JetCorrector.h"

#include "PhysicsTools/PatAlgos/interface/SoftMuonMvaEstimator.h"
#include "DataFormats/PatCandidates/interface/TriggerObjectStandAlone.h"
#include "DataFormats/Math/interface/deltaR.h"
#include "DataFormats/Math/interface/deltaPhi.h"

#include "Geometry/Records/interface/GlobalTrackingGeometryRecord.h"
#include "Geometry/CommonDetUnit/interface/GeomDet.h"

#include <vector>
#include <memory>

using namespace pat;
using namespace std;

PATMuonHeavyObjectCache::PATMuonHeavyObjectCache(const edm::ParameterSet& iConfig) {
  if (iConfig.getParameter<bool>("computeMuonMVA")) {
    edm::FileInPath mvaTrainingFile = iConfig.getParameter<edm::FileInPath>("mvaTrainingFile");
    edm::FileInPath mvaLowPtTrainingFile = iConfig.getParameter<edm::FileInPath>("lowPtmvaTrainingFile");
    float mvaDrMax = iConfig.getParameter<double>("mvaDrMax");
    muonMvaEstimator_ = std::make_unique<MuonMvaEstimator>(mvaTrainingFile, mvaDrMax);
    muonLowPtMvaEstimator_ = std::make_unique<MuonMvaEstimator>(mvaLowPtTrainingFile, mvaDrMax);
  }

  if (iConfig.getParameter<bool>("computeSoftMuonMVA")) {
    edm::FileInPath softMvaTrainingFile = iConfig.getParameter<edm::FileInPath>("softMvaTrainingFile");
    softMuonMvaEstimator_ = std::make_unique<SoftMuonMvaEstimator>(softMvaTrainingFile);
  }
}

PATMuonProducer::PATMuonProducer(const edm::ParameterSet& iConfig, PATMuonHeavyObjectCache const*)
    : relMiniIsoPUCorrected_(0),
      useUserData_(iConfig.exists("userData")),
      computeMuonMVA_(false),
      computeSoftMuonMVA_(false),
      recomputeBasicSelectors_(false),
      mvaUseJec_(false),
      isolator_(iConfig.exists("userIsolation") ? iConfig.getParameter<edm::ParameterSet>("userIsolation")
                                                : edm::ParameterSet(),
                consumesCollector(),
                false) {
  // input source
  muonToken_ = consumes<edm::View<reco::Muon>>(iConfig.getParameter<edm::InputTag>("muonSource"));
  // embedding of tracks
  embedBestTrack_ = iConfig.getParameter<bool>("embedMuonBestTrack");
  embedTunePBestTrack_ = iConfig.getParameter<bool>("embedTunePMuonBestTrack");
  forceEmbedBestTrack_ = iConfig.getParameter<bool>("forceBestTrackEmbedding");
  embedTrack_ = iConfig.getParameter<bool>("embedTrack");
  embedCombinedMuon_ = iConfig.getParameter<bool>("embedCombinedMuon");
  embedStandAloneMuon_ = iConfig.getParameter<bool>("embedStandAloneMuon");
  // embedding of muon MET correction information
  embedCaloMETMuonCorrs_ = iConfig.getParameter<bool>("embedCaloMETMuonCorrs");
  embedTcMETMuonCorrs_ = iConfig.getParameter<bool>("embedTcMETMuonCorrs");
  caloMETMuonCorrsToken_ =
      mayConsume<edm::ValueMap<reco::MuonMETCorrectionData>>(iConfig.getParameter<edm::InputTag>("caloMETMuonCorrs"));
  tcMETMuonCorrsToken_ =
      mayConsume<edm::ValueMap<reco::MuonMETCorrectionData>>(iConfig.getParameter<edm::InputTag>("tcMETMuonCorrs"));
  // pflow specific configurables
  useParticleFlow_ = iConfig.getParameter<bool>("useParticleFlow");
  embedPFCandidate_ = iConfig.getParameter<bool>("embedPFCandidate");
  pfMuonToken_ = mayConsume<reco::PFCandidateCollection>(iConfig.getParameter<edm::InputTag>("pfMuonSource"));
  embedPfEcalEnergy_ = iConfig.getParameter<bool>("embedPfEcalEnergy");
  // embedding of tracks from TeV refit
  embedPickyMuon_ = iConfig.getParameter<bool>("embedPickyMuon");
  embedTpfmsMuon_ = iConfig.getParameter<bool>("embedTpfmsMuon");
  embedDytMuon_ = iConfig.getParameter<bool>("embedDytMuon");
  // embedding of inverse beta variable information
  addInverseBeta_ = iConfig.getParameter<bool>("addInverseBeta");
  if (addInverseBeta_) {
    muonTimeExtraToken_ =
        consumes<edm::ValueMap<reco::MuonTimeExtra>>(iConfig.getParameter<edm::InputTag>("sourceMuonTimeExtra"));
  }
  // Monte Carlo matching
  addGenMatch_ = iConfig.getParameter<bool>("addGenMatch");
  if (addGenMatch_) {
    embedGenMatch_ = iConfig.getParameter<bool>("embedGenMatch");
    if (iConfig.existsAs<edm::InputTag>("genParticleMatch")) {
      genMatchTokens_.push_back(consumes<edm::Association<reco::GenParticleCollection>>(
          iConfig.getParameter<edm::InputTag>("genParticleMatch")));
    } else {
      genMatchTokens_ = edm::vector_transform(
          iConfig.getParameter<std::vector<edm::InputTag>>("genParticleMatch"),
          [this](edm::InputTag const& tag) { return consumes<edm::Association<reco::GenParticleCollection>>(tag); });
    }
  }
  // efficiencies
  addEfficiencies_ = iConfig.getParameter<bool>("addEfficiencies");
  if (addEfficiencies_) {
    efficiencyLoader_ =
        pat::helper::EfficiencyLoader(iConfig.getParameter<edm::ParameterSet>("efficiencies"), consumesCollector());
  }
  // resolutions
  addResolutions_ = iConfig.getParameter<bool>("addResolutions");
  if (addResolutions_) {
    resolutionLoader_ = pat::helper::KinResolutionsLoader(iConfig.getParameter<edm::ParameterSet>("resolutions"));
  }
  // puppi
  addPuppiIsolation_ = iConfig.getParameter<bool>("addPuppiIsolation");
  if (addPuppiIsolation_) {
    PUPPIIsolation_charged_hadrons_ =
        consumes<edm::ValueMap<float>>(iConfig.getParameter<edm::InputTag>("puppiIsolationChargedHadrons"));
    PUPPIIsolation_neutral_hadrons_ =
        consumes<edm::ValueMap<float>>(iConfig.getParameter<edm::InputTag>("puppiIsolationNeutralHadrons"));
    PUPPIIsolation_photons_ =
        consumes<edm::ValueMap<float>>(iConfig.getParameter<edm::InputTag>("puppiIsolationPhotons"));
    //puppiNoLeptons
    PUPPINoLeptonsIsolation_charged_hadrons_ =
        consumes<edm::ValueMap<float>>(iConfig.getParameter<edm::InputTag>("puppiNoLeptonsIsolationChargedHadrons"));
    PUPPINoLeptonsIsolation_neutral_hadrons_ =
        consumes<edm::ValueMap<float>>(iConfig.getParameter<edm::InputTag>("puppiNoLeptonsIsolationNeutralHadrons"));
    PUPPINoLeptonsIsolation_photons_ =
        consumes<edm::ValueMap<float>>(iConfig.getParameter<edm::InputTag>("puppiNoLeptonsIsolationPhotons"));
  }
  // read isoDeposit labels, for direct embedding
  readIsolationLabels(iConfig, "isoDeposits", isoDepositLabels_, isoDepositTokens_);
  // read isolation value labels, for direct embedding
  readIsolationLabels(iConfig, "isolationValues", isolationValueLabels_, isolationValueTokens_);
  // check to see if the user wants to add user data
  if (useUserData_) {
    userDataHelper_ = PATUserDataHelper<Muon>(iConfig.getParameter<edm::ParameterSet>("userData"), consumesCollector());
  }
  // embed high level selection variables
  embedHighLevelSelection_ = iConfig.getParameter<bool>("embedHighLevelSelection");
  if (embedHighLevelSelection_) {
    beamLineToken_ = consumes<reco::BeamSpot>(iConfig.getParameter<edm::InputTag>("beamLineSrc"));
    pvToken_ = consumes<std::vector<reco::Vertex>>(iConfig.getParameter<edm::InputTag>("pvSrc"));
  }

  //for mini-isolation calculation
  computeMiniIso_ = iConfig.getParameter<bool>("computeMiniIso");

  computePuppiCombinedIso_ = iConfig.getParameter<bool>("computePuppiCombinedIso");

  effectiveAreaVec_ = iConfig.getParameter<std::vector<double>>("effectiveAreaVec");

  miniIsoParams_ = iConfig.getParameter<std::vector<double>>("miniIsoParams");
  if (computeMiniIso_ && miniIsoParams_.size() != 9) {
    throw cms::Exception("ParameterError") << "miniIsoParams must have exactly 9 elements.\n";
  }
  if (computeMiniIso_ || computePuppiCombinedIso_)
    pcToken_ = consumes<pat::PackedCandidateCollection>(iConfig.getParameter<edm::InputTag>("pfCandsForMiniIso"));

  // standard selectors
  recomputeBasicSelectors_ = iConfig.getParameter<bool>("recomputeBasicSelectors");
  computeMuonMVA_ = iConfig.getParameter<bool>("computeMuonMVA");
  if (computeMuonMVA_ and not computeMiniIso_)
    throw cms::Exception("ConfigurationError") << "MiniIso is needed for Muon MVA calculation.\n";

  if (computeMuonMVA_) {
    // pfCombinedInclusiveSecondaryVertexV2BJetTags
    mvaBTagCollectionTag_ = consumes<reco::JetTagCollection>(iConfig.getParameter<edm::InputTag>("mvaJetTag"));
    mvaL1Corrector_ = consumes<reco::JetCorrector>(iConfig.getParameter<edm::InputTag>("mvaL1Corrector"));
    mvaL1L2L3ResCorrector_ = consumes<reco::JetCorrector>(iConfig.getParameter<edm::InputTag>("mvaL1L2L3ResCorrector"));
    rho_ = consumes<double>(iConfig.getParameter<edm::InputTag>("rho"));
    mvaUseJec_ = iConfig.getParameter<bool>("mvaUseJec");
  }

  computeSoftMuonMVA_ = iConfig.getParameter<bool>("computeSoftMuonMVA");

  // MC info
  simInfo_ = consumes<edm::ValueMap<reco::MuonSimInfo>>(iConfig.getParameter<edm::InputTag>("muonSimInfo"));

  addTriggerMatching_ = iConfig.getParameter<bool>("addTriggerMatching");
  if (addTriggerMatching_) {
    triggerObjects_ =
        consumes<std::vector<pat::TriggerObjectStandAlone>>(iConfig.getParameter<edm::InputTag>("triggerObjects"));
    triggerResults_ = consumes<edm::TriggerResults>(iConfig.getParameter<edm::InputTag>("triggerResults"));
  }
  hltCollectionFilters_ = iConfig.getParameter<std::vector<std::string>>("hltCollectionFilters");

  // produces vector of muons
  produces<std::vector<Muon>>();
}

PATMuonProducer::~PATMuonProducer() {}

std::optional<GlobalPoint> PATMuonProducer::getMuonDirection(const reco::MuonChamberMatch& chamberMatch,
                                                             const edm::ESHandle<GlobalTrackingGeometry>& geometry,
                                                             const DetId& chamberId) {
  const GeomDet* chamberGeometry = geometry->idToDet(chamberId);
  if (chamberGeometry) {
    LocalPoint localPosition(chamberMatch.x, chamberMatch.y, 0);
    return std::optional<GlobalPoint>(std::in_place, chamberGeometry->toGlobal(localPosition));
  }
  return std::optional<GlobalPoint>();
}

void PATMuonProducer::fillL1TriggerInfo(pat::Muon& aMuon,
                                        edm::Handle<std::vector<pat::TriggerObjectStandAlone>>& triggerObjects,
                                        const edm::TriggerNames& names,
                                        const edm::ESHandle<GlobalTrackingGeometry>& geometry) {
  // L1 trigger object parameters are defined at MB2/ME2. Use the muon
  // chamber matching information to get the local direction of the
  // muon trajectory and convert it to a global direction to match the
  // trigger objects

  std::optional<GlobalPoint> muonPosition;
  // Loop over chambers
  // initialize muonPosition with any available match, just in case
  // the second station is missing - it's better folling back to
  // dR matching at IP
  for (const auto& chamberMatch : aMuon.matches()) {
    if (chamberMatch.id.subdetId() == MuonSubdetId::DT) {
      DTChamberId detId(chamberMatch.id.rawId());
      if (abs(detId.station()) > 3)
        continue;
      muonPosition = getMuonDirection(chamberMatch, geometry, detId);
      if (abs(detId.station()) == 2)
        break;
    }
    if (chamberMatch.id.subdetId() == MuonSubdetId::CSC) {
      CSCDetId detId(chamberMatch.id.rawId());
      if (abs(detId.station()) > 3)
        continue;
      muonPosition = getMuonDirection(chamberMatch, geometry, detId);
      if (abs(detId.station()) == 2)
        break;
    }
  }
  if (not muonPosition)
    return;
  for (const auto& triggerObject : *triggerObjects) {
    if (triggerObject.hasTriggerObjectType(trigger::TriggerL1Mu)) {
      if (fabs(triggerObject.eta()) < 0.001) {
        // L1 is defined in X-Y plain
        if (deltaPhi(triggerObject.phi(), muonPosition->phi()) > 0.1)
          continue;
      } else {
        // 3D L1
        if (deltaR(triggerObject.p4(), *muonPosition) > 0.15)
          continue;
      }
      pat::TriggerObjectStandAlone obj(triggerObject);
      obj.unpackPathNames(names);
      aMuon.addTriggerObjectMatch(obj);
    }
  }
}

void PATMuonProducer::fillHltTriggerInfo(pat::Muon& muon,
                                         edm::Handle<std::vector<pat::TriggerObjectStandAlone>>& triggerObjects,
                                         const edm::TriggerNames& names,
                                         const std::vector<std::string>& collection_filter_names) {
  // WARNING: in a case of close-by muons the dR matching may select both muons.
  // It's better to select the best match for a given collection.
  for (const auto& triggerObject : *triggerObjects) {
    if (triggerObject.hasTriggerObjectType(trigger::TriggerMuon)) {
      bool keepIt = false;
      for (const auto& name : collection_filter_names) {
        if (triggerObject.hasCollection(name)) {
          keepIt = true;
          break;
        }
      }
      if (not keepIt)
        continue;
      if (deltaR(triggerObject.p4(), muon) > 0.1)
        continue;
      pat::TriggerObjectStandAlone obj(triggerObject);
      obj.unpackPathNames(names);
      muon.addTriggerObjectMatch(obj);
    }
  }
}

void PATMuonProducer::produce(edm::Event& iEvent, const edm::EventSetup& iSetup) {
  // get the tracking Geometry
  edm::ESHandle<GlobalTrackingGeometry> geometry;
  iSetup.get<GlobalTrackingGeometryRecord>().get(geometry);
  if (!geometry.isValid())
    throw cms::Exception("FatalError") << "Unable to find GlobalTrackingGeometryRecord in event!\n";

  // switch off embedding (in unschedules mode)
  if (iEvent.isRealData()) {
    addGenMatch_ = false;
    embedGenMatch_ = false;
  }

  edm::Handle<edm::View<reco::Muon>> muons;
  iEvent.getByToken(muonToken_, muons);

  edm::Handle<pat::PackedCandidateCollection> pc;
  if (computeMiniIso_ || computePuppiCombinedIso_)
    iEvent.getByToken(pcToken_, pc);

  // get the ESHandle for the transient track builder,
  // if needed for high level selection embedding
  edm::ESHandle<TransientTrackBuilder> trackBuilder;

  if (isolator_.enabled())
    isolator_.beginEvent(iEvent, iSetup);
  if (efficiencyLoader_.enabled())
    efficiencyLoader_.newEvent(iEvent);
  if (resolutionLoader_.enabled())
    resolutionLoader_.newEvent(iEvent, iSetup);

  IsoDepositMaps deposits(isoDepositTokens_.size());
  for (size_t j = 0; j < isoDepositTokens_.size(); ++j) {
    iEvent.getByToken(isoDepositTokens_[j], deposits[j]);
  }

  IsolationValueMaps isolationValues(isolationValueTokens_.size());
  for (size_t j = 0; j < isolationValueTokens_.size(); ++j) {
    iEvent.getByToken(isolationValueTokens_[j], isolationValues[j]);
  }

  //value maps for puppi isolation
  edm::Handle<edm::ValueMap<float>> PUPPIIsolation_charged_hadrons;
  edm::Handle<edm::ValueMap<float>> PUPPIIsolation_neutral_hadrons;
  edm::Handle<edm::ValueMap<float>> PUPPIIsolation_photons;
  //value maps for puppiNoLeptons isolation
  edm::Handle<edm::ValueMap<float>> PUPPINoLeptonsIsolation_charged_hadrons;
  edm::Handle<edm::ValueMap<float>> PUPPINoLeptonsIsolation_neutral_hadrons;
  edm::Handle<edm::ValueMap<float>> PUPPINoLeptonsIsolation_photons;
  if (addPuppiIsolation_) {
    //puppi
    iEvent.getByToken(PUPPIIsolation_charged_hadrons_, PUPPIIsolation_charged_hadrons);
    iEvent.getByToken(PUPPIIsolation_neutral_hadrons_, PUPPIIsolation_neutral_hadrons);
    iEvent.getByToken(PUPPIIsolation_photons_, PUPPIIsolation_photons);
    //puppiNoLeptons
    iEvent.getByToken(PUPPINoLeptonsIsolation_charged_hadrons_, PUPPINoLeptonsIsolation_charged_hadrons);
    iEvent.getByToken(PUPPINoLeptonsIsolation_neutral_hadrons_, PUPPINoLeptonsIsolation_neutral_hadrons);
    iEvent.getByToken(PUPPINoLeptonsIsolation_photons_, PUPPINoLeptonsIsolation_photons);
  }

  // inputs for muon mva
  edm::Handle<reco::JetTagCollection> mvaBTagCollectionTag;
  edm::Handle<reco::JetCorrector> mvaL1Corrector;
  edm::Handle<reco::JetCorrector> mvaL1L2L3ResCorrector;
  if (computeMuonMVA_) {
    iEvent.getByToken(mvaBTagCollectionTag_, mvaBTagCollectionTag);
    iEvent.getByToken(mvaL1Corrector_, mvaL1Corrector);
    iEvent.getByToken(mvaL1L2L3ResCorrector_, mvaL1L2L3ResCorrector);
  }

  // prepare the MC genMatchTokens_
  GenAssociations genMatches(genMatchTokens_.size());
  if (addGenMatch_) {
    for (size_t j = 0, nd = genMatchTokens_.size(); j < nd; ++j) {
      iEvent.getByToken(genMatchTokens_[j], genMatches[j]);
    }
  }

  // prepare the high level selection: needs beamline
  // OR primary vertex, depending on user selection
  reco::Vertex primaryVertex;
  reco::BeamSpot beamSpot;
  bool beamSpotIsValid = false;
  bool primaryVertexIsValid = false;
  if (embedHighLevelSelection_) {
    // get the beamspot
    edm::Handle<reco::BeamSpot> beamSpotHandle;
    iEvent.getByToken(beamLineToken_, beamSpotHandle);

    // get the primary vertex
    edm::Handle<std::vector<reco::Vertex>> pvHandle;
    iEvent.getByToken(pvToken_, pvHandle);

    if (beamSpotHandle.isValid()) {
      beamSpot = *beamSpotHandle;
      beamSpotIsValid = true;
    } else {
      edm::LogError("DataNotAvailable") << "No beam spot available from EventSetup, not adding high level selection \n";
    }
    if (pvHandle.isValid() && !pvHandle->empty()) {
      primaryVertex = pvHandle->at(0);
      primaryVertexIsValid = true;
    } else {
      edm::LogError("DataNotAvailable")
          << "No primary vertex available from EventSetup, not adding high level selection \n";
    }
    // this is needed by the IPTools methods from the tracking group
    iSetup.get<TransientTrackRecord>().get("TransientTrackBuilder", trackBuilder);
  }

  // MC info
  edm::Handle<edm::ValueMap<reco::MuonSimInfo>> simInfo;
  bool simInfoIsAvailalbe = iEvent.getByToken(simInfo_, simInfo);

  // this will be the new object collection
  std::vector<Muon>* patMuons = new std::vector<Muon>();

  edm::Handle<reco::PFCandidateCollection> pfMuons;
  if (useParticleFlow_) {
    // get the PFCandidates of type muons
    iEvent.getByToken(pfMuonToken_, pfMuons);

    unsigned index = 0;
    for (reco::PFCandidateConstIterator i = pfMuons->begin(); i != pfMuons->end(); ++i, ++index) {
      const reco::PFCandidate& pfmu = *i;
      //const reco::IsolaPFCandidate& pfmu = *i;
      const reco::MuonRef& muonRef = pfmu.muonRef();
      assert(muonRef.isNonnull());

      MuonBaseRef muonBaseRef(muonRef);
      Muon aMuon(muonBaseRef);

      if (useUserData_) {
        userDataHelper_.add(aMuon, iEvent, iSetup);
      }

      // embed high level selection
      if (embedHighLevelSelection_) {
        // get the tracks
        reco::TrackRef innerTrack = muonBaseRef->innerTrack();
        reco::TrackRef globalTrack = muonBaseRef->globalTrack();
        reco::TrackRef bestTrack = muonBaseRef->muonBestTrack();
        reco::TrackRef chosenTrack = innerTrack;
        // Make sure the collection it points to is there
        if (bestTrack.isNonnull() && bestTrack.isAvailable())
          chosenTrack = bestTrack;

        if (chosenTrack.isNonnull() && chosenTrack.isAvailable()) {
          unsigned int nhits = chosenTrack->numberOfValidHits();  // ????
          aMuon.setNumberOfValidHits(nhits);

          reco::TransientTrack tt = trackBuilder->build(chosenTrack);
          embedHighLevel(aMuon, chosenTrack, tt, primaryVertex, primaryVertexIsValid, beamSpot, beamSpotIsValid);
        }

        if (globalTrack.isNonnull() && globalTrack.isAvailable() && !embedCombinedMuon_) {
          double norm_chi2 = globalTrack->chi2() / globalTrack->ndof();
          aMuon.setNormChi2(norm_chi2);
        }
      }
      reco::PFCandidateRef pfRef(pfMuons, index);
      //reco::PFCandidatePtr ptrToMother(pfMuons,index);
      reco::CandidateBaseRef pfBaseRef(pfRef);

      aMuon.setPFCandidateRef(pfRef);
      if (embedPFCandidate_)
        aMuon.embedPFCandidate();
      fillMuon(aMuon, muonBaseRef, pfBaseRef, genMatches, deposits, isolationValues);

      if (computeMiniIso_)
        setMuonMiniIso(aMuon, pc.product());

      if (addPuppiIsolation_) {
        aMuon.setIsolationPUPPI((*PUPPIIsolation_charged_hadrons)[muonBaseRef],
                                (*PUPPIIsolation_neutral_hadrons)[muonBaseRef],
                                (*PUPPIIsolation_photons)[muonBaseRef]);

        aMuon.setIsolationPUPPINoLeptons((*PUPPINoLeptonsIsolation_charged_hadrons)[muonBaseRef],
                                         (*PUPPINoLeptonsIsolation_neutral_hadrons)[muonBaseRef],
                                         (*PUPPINoLeptonsIsolation_photons)[muonBaseRef]);
      } else {
        aMuon.setIsolationPUPPI(-999., -999., -999.);
        aMuon.setIsolationPUPPINoLeptons(-999., -999., -999.);
      }

      if (embedPfEcalEnergy_) {
        aMuon.setPfEcalEnergy(pfmu.ecalEnergy());
      }

      patMuons->push_back(aMuon);
    }
  } else {
    edm::Handle<edm::View<reco::Muon>> muons;
    iEvent.getByToken(muonToken_, muons);

    // embedding of muon MET corrections
    edm::Handle<edm::ValueMap<reco::MuonMETCorrectionData>> caloMETMuonCorrs;
    //edm::ValueMap<reco::MuonMETCorrectionData> caloMETmuCorValueMap;
    if (embedCaloMETMuonCorrs_) {
      iEvent.getByToken(caloMETMuonCorrsToken_, caloMETMuonCorrs);
      //caloMETmuCorValueMap  = *caloMETmuCorValueMap_h;
    }
    edm::Handle<edm::ValueMap<reco::MuonMETCorrectionData>> tcMETMuonCorrs;
    //edm::ValueMap<reco::MuonMETCorrectionData> tcMETmuCorValueMap;
    if (embedTcMETMuonCorrs_) {
      iEvent.getByToken(tcMETMuonCorrsToken_, tcMETMuonCorrs);
      //tcMETmuCorValueMap  = *tcMETmuCorValueMap_h;
    }

    if (embedPfEcalEnergy_) {
      // get the PFCandidates of type muons
      iEvent.getByToken(pfMuonToken_, pfMuons);
    }

    edm::Handle<edm::ValueMap<reco::MuonTimeExtra>> muonsTimeExtra;
    if (addInverseBeta_) {
      // get MuonTimerExtra value map
      iEvent.getByToken(muonTimeExtraToken_, muonsTimeExtra);
    }

    for (edm::View<reco::Muon>::const_iterator itMuon = muons->begin(); itMuon != muons->end(); ++itMuon) {
      // construct the Muon from the ref -> save ref to original object
      unsigned int idx = itMuon - muons->begin();
      MuonBaseRef muonRef = muons->refAt(idx);
      reco::CandidateBaseRef muonBaseRef(muonRef);

      Muon aMuon(muonRef);
      fillMuon(aMuon, muonRef, muonBaseRef, genMatches, deposits, isolationValues);
      if (computeMiniIso_)
        setMuonMiniIso(aMuon, pc.product());
      if (addPuppiIsolation_) {
        aMuon.setIsolationPUPPI((*PUPPIIsolation_charged_hadrons)[muonRef],
                                (*PUPPIIsolation_neutral_hadrons)[muonRef],
                                (*PUPPIIsolation_photons)[muonRef]);
        aMuon.setIsolationPUPPINoLeptons((*PUPPINoLeptonsIsolation_charged_hadrons)[muonRef],
                                         (*PUPPINoLeptonsIsolation_neutral_hadrons)[muonRef],
                                         (*PUPPINoLeptonsIsolation_photons)[muonRef]);
      } else {
        aMuon.setIsolationPUPPI(-999., -999., -999.);
        aMuon.setIsolationPUPPINoLeptons(-999., -999., -999.);
      }

      // Isolation
      if (isolator_.enabled()) {
        //reco::CandidatePtr mother =  ptrToMother->sourceCandidatePtr(0);
        isolator_.fill(*muons, idx, isolatorTmpStorage_);
        typedef pat::helper::MultiIsolator::IsolationValuePairs IsolationValuePairs;
        // better to loop backwards, so the vector is resized less times
        for (IsolationValuePairs::const_reverse_iterator it = isolatorTmpStorage_.rbegin(),
                                                         ed = isolatorTmpStorage_.rend();
             it != ed;
             ++it) {
          aMuon.setIsolation(it->first, it->second);
        }
      }

      //       for (size_t j = 0, nd = deposits.size(); j < nd; ++j) {
      //    aMuon.setIsoDeposit(isoDepositLabels_[j].first,
      //                (*deposits[j])[muonRef]);
      //       }

      // add sel to selected
      edm::Ptr<reco::Muon> muonsPtr = muons->ptrAt(idx);
      if (useUserData_) {
        userDataHelper_.add(aMuon, iEvent, iSetup);
      }

      // embed high level selection
      if (embedHighLevelSelection_) {
        // get the tracks
        reco::TrackRef innerTrack = itMuon->innerTrack();
        reco::TrackRef globalTrack = itMuon->globalTrack();
        reco::TrackRef bestTrack = itMuon->muonBestTrack();
        reco::TrackRef chosenTrack = innerTrack;
        // Make sure the collection it points to is there
        if (bestTrack.isNonnull() && bestTrack.isAvailable())
          chosenTrack = bestTrack;
        if (chosenTrack.isNonnull() && chosenTrack.isAvailable()) {
          unsigned int nhits = chosenTrack->numberOfValidHits();  // ????
          aMuon.setNumberOfValidHits(nhits);

          reco::TransientTrack tt = trackBuilder->build(chosenTrack);
          embedHighLevel(aMuon, chosenTrack, tt, primaryVertex, primaryVertexIsValid, beamSpot, beamSpotIsValid);
        }

        if (globalTrack.isNonnull() && globalTrack.isAvailable()) {
          double norm_chi2 = globalTrack->chi2() / globalTrack->ndof();
          aMuon.setNormChi2(norm_chi2);
        }
      }

      // embed MET muon corrections
      if (embedCaloMETMuonCorrs_)
        aMuon.embedCaloMETMuonCorrs((*caloMETMuonCorrs)[muonRef]);
      if (embedTcMETMuonCorrs_)
        aMuon.embedTcMETMuonCorrs((*tcMETMuonCorrs)[muonRef]);

      if (embedPfEcalEnergy_) {
        aMuon.setPfEcalEnergy(-99.0);
        for (const reco::PFCandidate& pfmu : *pfMuons) {
          if (pfmu.muonRef().isNonnull()) {
            if (pfmu.muonRef().id() != muonRef.id())
              throw cms::Exception("Configuration")
                  << "Muon reference within PF candidates does not point to the muon collection." << std::endl;
            if (pfmu.muonRef().key() == muonRef.key()) {
              aMuon.setPfEcalEnergy(pfmu.ecalEnergy());
            }
          }
        }
      }
      if (addInverseBeta_) {
        aMuon.readTimeExtra((*muonsTimeExtra)[muonRef]);
      }
      // MC info
      aMuon.initSimInfo();
      if (simInfoIsAvailalbe) {
        const auto& msi = (*simInfo)[muonBaseRef];
        aMuon.setSimType(msi.primaryClass);
        aMuon.setExtSimType(msi.extendedClass);
        aMuon.setSimFlavour(msi.flavour);
        aMuon.setSimHeaviestMotherFlavour(msi.heaviestMotherFlavour);
        aMuon.setSimPdgId(msi.pdgId);
        aMuon.setSimMotherPdgId(msi.motherPdgId);
        aMuon.setSimBX(msi.tpBX);
        aMuon.setSimTpEvent(msi.tpEvent);
        aMuon.setSimProdRho(msi.vertex.Rho());
        aMuon.setSimProdZ(msi.vertex.Z());
        aMuon.setSimPt(msi.p4.pt());
        aMuon.setSimEta(msi.p4.eta());
        aMuon.setSimPhi(msi.p4.phi());
        aMuon.setSimMatchQuality(msi.tpAssoQuality);
      }
      patMuons->push_back(aMuon);
    }
  }

  // sort muons in pt
  std::sort(patMuons->begin(), patMuons->end(), pTComparator_);

  // Store standard muon selection decisions and jet related
  // quantaties.
  // Need a separate loop over muons to have all inputs properly
  // computed and stored in the object.
  edm::Handle<double> rho;
  if (computeMuonMVA_)
    iEvent.getByToken(rho_, rho);
  const reco::Vertex* pv(nullptr);
  if (primaryVertexIsValid)
    pv = &primaryVertex;

  edm::Handle<std::vector<pat::TriggerObjectStandAlone>> triggerObjects;
  edm::Handle<edm::TriggerResults> triggerResults;
  bool triggerObjectsAvailable = false;
  bool triggerResultsAvailable = false;
  if (addTriggerMatching_) {
    triggerObjectsAvailable = iEvent.getByToken(triggerObjects_, triggerObjects);
    triggerResultsAvailable = iEvent.getByToken(triggerResults_, triggerResults);
  }

  for (auto& muon : *patMuons) {
    // trigger info
    if (addTriggerMatching_ and triggerObjectsAvailable and triggerResultsAvailable) {
      const edm::TriggerNames& triggerNames(iEvent.triggerNames(*triggerResults));
      fillL1TriggerInfo(muon, triggerObjects, triggerNames, geometry);
      fillHltTriggerInfo(muon, triggerObjects, triggerNames, hltCollectionFilters_);
    }

    if (recomputeBasicSelectors_) {
      muon.setSelectors(0);
      bool isRun2016BCDEF = (272728 <= iEvent.run() && iEvent.run() <= 278808);
      muon.setSelectors(muon::makeSelectorBitset(muon, pv, isRun2016BCDEF));
    }
    float miniIsoValue = -1;
    if (computeMiniIso_) {
      // MiniIsolation working points

      miniIsoValue = getRelMiniIsoPUCorrected(muon, *rho, effectiveAreaVec_);

      muon.setSelector(reco::Muon::MiniIsoLoose, miniIsoValue < 0.40);
      muon.setSelector(reco::Muon::MiniIsoMedium, miniIsoValue < 0.20);
      muon.setSelector(reco::Muon::MiniIsoTight, miniIsoValue < 0.10);
      muon.setSelector(reco::Muon::MiniIsoVeryTight, miniIsoValue < 0.05);
    }

    double puppiCombinedIsolationPAT = -1;
    if (computePuppiCombinedIso_) {
      puppiCombinedIsolationPAT = puppiCombinedIsolation(muon, pc.product());
      muon.setSelector(reco::Muon::PuppiIsoLoose, puppiCombinedIsolationPAT < 0.27);
      muon.setSelector(reco::Muon::PuppiIsoMedium, puppiCombinedIsolationPAT < 0.22);
      muon.setSelector(reco::Muon::PuppiIsoTight, puppiCombinedIsolationPAT < 0.12);
    }

    float jetPtRatio = 0.0;
    float jetPtRel = 0.0;
    float mva = 0.0;
    float mva_lowpt = 0.0;
    if (computeMuonMVA_ && primaryVertexIsValid && computeMiniIso_) {
      if (mvaUseJec_) {
        mva = globalCache()->muonMvaEstimator()->computeMva(muon,
                                                            primaryVertex,
                                                            *(mvaBTagCollectionTag.product()),
                                                            jetPtRatio,
                                                            jetPtRel,
                                                            miniIsoValue,
                                                            &*mvaL1Corrector,
                                                            &*mvaL1L2L3ResCorrector);
        mva_lowpt = globalCache()->muonLowPtMvaEstimator()->computeMva(muon,
                                                                       primaryVertex,
                                                                       *(mvaBTagCollectionTag.product()),
                                                                       jetPtRatio,
                                                                       jetPtRel,
                                                                       miniIsoValue,
                                                                       &*mvaL1Corrector,
                                                                       &*mvaL1L2L3ResCorrector);

      } else {
        mva = globalCache()->muonMvaEstimator()->computeMva(
            muon, primaryVertex, *(mvaBTagCollectionTag.product()), jetPtRatio, jetPtRel, miniIsoValue);
        mva_lowpt = globalCache()->muonLowPtMvaEstimator()->computeMva(
            muon, primaryVertex, *(mvaBTagCollectionTag.product()), jetPtRatio, jetPtRel, miniIsoValue);
      }

      muon.setMvaValue(mva);
      muon.setLowPtMvaValue(mva_lowpt);
      muon.setJetPtRatio(jetPtRatio);
      muon.setJetPtRel(jetPtRel);

      // multi-isolation
      if (computeMiniIso_) {
        muon.setSelector(reco::Muon::MultiIsoMedium,
                         miniIsoValue < 0.11 && (muon.jetPtRatio() > 0.74 || muon.jetPtRel() > 6.8));
      }

      // MVA working points
      // https://twiki.cern.ch/twiki/bin/viewauth/CMS/LeptonMVA
      double dB2D = fabs(muon.dB(pat::Muon::PV2D));
      double dB3D = fabs(muon.dB(pat::Muon::PV3D));
      double edB3D = fabs(muon.edB(pat::Muon::PV3D));
      double sip3D = edB3D > 0 ? dB3D / edB3D : 0.0;
      double dz = fabs(muon.muonBestTrack()->dz(primaryVertex.position()));

      // muon preselection
      if (muon.pt() > 5 and muon.isLooseMuon() and muon.passed(reco::Muon::MiniIsoLoose) and sip3D < 8.0 and
          dB2D < 0.05 and dz < 0.1) {
        muon.setSelector(reco::Muon::MvaLoose, muon.mvaValue() > -0.60);
        muon.setSelector(reco::Muon::MvaMedium, muon.mvaValue() > -0.20);
        muon.setSelector(reco::Muon::MvaTight, muon.mvaValue() > 0.15);
        muon.setSelector(reco::Muon::MvaVTight, muon.mvaValue() > 0.45);
        muon.setSelector(reco::Muon::MvaVVTight, muon.mvaValue() > 0.9);
      }
      if (muon.pt() > 5 and muon.isLooseMuon() and sip3D < 4 and dB2D < 0.5 and dz < 1) {
        muon.setSelector(reco::Muon::LowPtMvaLoose, muon.lowptMvaValue() > -0.60);
        muon.setSelector(reco::Muon::LowPtMvaMedium, muon.lowptMvaValue() > -0.20);
      }
    }

    //SOFT MVA
    if (computeSoftMuonMVA_) {
      float mva = globalCache()->softMuonMvaEstimator()->computeMva(muon);
      muon.setSoftMvaValue(mva);
      //preselection in SoftMuonMvaEstimator.cc
      muon.setSelector(reco::Muon::SoftMvaId, muon.softMvaValue() > 0.58);  //WP choose for bmm4
    }
  }

  // put products in Event
  std::unique_ptr<std::vector<Muon>> ptr(patMuons);
  iEvent.put(std::move(ptr));

  if (isolator_.enabled())
    isolator_.endEvent();
}

void PATMuonProducer::fillMuon(Muon& aMuon,
                               const MuonBaseRef& muonRef,
                               const reco::CandidateBaseRef& baseRef,
                               const GenAssociations& genMatches,
                               const IsoDepositMaps& deposits,
                               const IsolationValueMaps& isolationValues) const {
  // in the particle flow algorithm,
  // the muon momentum is recomputed.
  // the new value is stored as the momentum of the
  // resulting PFCandidate of type Muon, and choosen
  // as the pat::Muon momentum
  if (useParticleFlow_)
    aMuon.setP4(aMuon.pfCandidateRef()->p4());
  if (embedTrack_)
    aMuon.embedTrack();
  if (embedStandAloneMuon_)
    aMuon.embedStandAloneMuon();
  if (embedCombinedMuon_)
    aMuon.embedCombinedMuon();

  // embed the TeV refit track refs (only available for globalMuons)
  if (aMuon.isGlobalMuon()) {
    if (embedPickyMuon_ && aMuon.isAValidMuonTrack(reco::Muon::Picky))
      aMuon.embedPickyMuon();
    if (embedTpfmsMuon_ && aMuon.isAValidMuonTrack(reco::Muon::TPFMS))
      aMuon.embedTpfmsMuon();
    if (embedDytMuon_ && aMuon.isAValidMuonTrack(reco::Muon::DYT))
      aMuon.embedDytMuon();
  }

  // embed best tracks (at the end, so unless forceEmbedBestTrack_ is true we can save some space not embedding them twice)
  if (embedBestTrack_)
    aMuon.embedMuonBestTrack(forceEmbedBestTrack_);
  if (embedTunePBestTrack_)
    aMuon.embedTunePMuonBestTrack(forceEmbedBestTrack_);

  // store the match to the generated final state muons
  if (addGenMatch_) {
    for (size_t i = 0, n = genMatches.size(); i < n; ++i) {
      reco::GenParticleRef genMuon = (*genMatches[i])[baseRef];
      aMuon.addGenParticleRef(genMuon);
    }
    if (embedGenMatch_)
      aMuon.embedGenParticle();
  }
  if (efficiencyLoader_.enabled()) {
    efficiencyLoader_.setEfficiencies(aMuon, muonRef);
  }

  for (size_t j = 0, nd = deposits.size(); j < nd; ++j) {
    if (useParticleFlow_) {
      if (deposits[j]->contains(baseRef.id())) {
        aMuon.setIsoDeposit(isoDepositLabels_[j].first, (*deposits[j])[baseRef]);
      } else if (deposits[j]->contains(muonRef.id())) {
        aMuon.setIsoDeposit(isoDepositLabels_[j].first, (*deposits[j])[muonRef]);
      } else {
        reco::CandidatePtr source = aMuon.pfCandidateRef()->sourceCandidatePtr(0);
        aMuon.setIsoDeposit(isoDepositLabels_[j].first, (*deposits[j])[source]);
      }
    } else {
      aMuon.setIsoDeposit(isoDepositLabels_[j].first, (*deposits[j])[muonRef]);
    }
  }

  for (size_t j = 0; j < isolationValues.size(); ++j) {
    if (useParticleFlow_) {
      if (isolationValues[j]->contains(baseRef.id())) {
        aMuon.setIsolation(isolationValueLabels_[j].first, (*isolationValues[j])[baseRef]);
      } else if (isolationValues[j]->contains(muonRef.id())) {
        aMuon.setIsolation(isolationValueLabels_[j].first, (*isolationValues[j])[muonRef]);
      } else {
        reco::CandidatePtr source = aMuon.pfCandidateRef()->sourceCandidatePtr(0);
        aMuon.setIsolation(isolationValueLabels_[j].first, (*isolationValues[j])[source]);
      }
    } else {
      aMuon.setIsolation(isolationValueLabels_[j].first, (*isolationValues[j])[muonRef]);
    }
  }

  if (resolutionLoader_.enabled()) {
    resolutionLoader_.setResolutions(aMuon);
  }
}

void PATMuonProducer::setMuonMiniIso(Muon& aMuon, const PackedCandidateCollection* pc) {
  pat::PFIsolation miniiso = pat::getMiniPFIsolation(pc,
                                                     aMuon.p4(),
                                                     miniIsoParams_[0],
                                                     miniIsoParams_[1],
                                                     miniIsoParams_[2],
                                                     miniIsoParams_[3],
                                                     miniIsoParams_[4],
                                                     miniIsoParams_[5],
                                                     miniIsoParams_[6],
                                                     miniIsoParams_[7],
                                                     miniIsoParams_[8]);
  aMuon.setMiniPFIsolation(miniiso);
}

double PATMuonProducer::getRelMiniIsoPUCorrected(const pat::Muon& muon, double rho, const std::vector<double>& area) {
  double mindr(miniIsoParams_[0]);
  double maxdr(miniIsoParams_[1]);
  double kt_scale(miniIsoParams_[2]);
  double drcut = pat::miniIsoDr(muon.p4(), mindr, maxdr, kt_scale);
  return pat::muonRelMiniIsoPUCorrected(muon.miniPFIsolation(), muon.p4(), drcut, rho, area);
}

double PATMuonProducer::puppiCombinedIsolation(const pat::Muon& muon, const pat::PackedCandidateCollection* pc) {
  double dR_threshold = 0.4;
  double dR2_threshold = dR_threshold * dR_threshold;
  double mix_fraction = 0.5;
  enum particleType { CH = 0, NH = 1, PH = 2, OTHER = 100000 };
  double val_PuppiWithLep = 0.0;
  double val_PuppiWithoutLep = 0.0;

  for (const auto& cand : *pc) {  //pat::pat::PackedCandidate loop start

    const particleType pType =
        isChargedHadron(cand.pdgId()) ? CH : isNeutralHadron(cand.pdgId()) ? NH : isPhoton(cand.pdgId()) ? PH : OTHER;
    if (pType == OTHER) {
      if (cand.pdgId() != 1 && cand.pdgId() != 2 && abs(cand.pdgId()) != 11 && abs(cand.pdgId()) != 13) {
        LogTrace("PATMuonProducer") << "candidate with PDGID = " << cand.pdgId()
                                    << " is not CH/NH/PH/e/mu or 1/2 (and this is removed from isolation calculation)"
                                    << std::endl;
      }
      continue;
    }
    double d_eta = std::abs(cand.eta() - muon.eta());
    if (d_eta > dR_threshold)
      continue;

    double d_phi = std::abs(reco::deltaPhi(cand.phi(), muon.phi()));
    if (d_phi > dR_threshold)
      continue;

    double dR2 = reco::deltaR2(cand, muon);
    if (dR2 > dR2_threshold)
      continue;
    if (pType == CH && dR2 < 0.0001 * 0.0001)
      continue;
    if (pType == NH && dR2 < 0.01 * 0.01)
      continue;
    if (pType == PH && dR2 < 0.01 * 0.01)
      continue;
    val_PuppiWithLep += cand.pt() * cand.puppiWeight();
    val_PuppiWithoutLep += cand.pt() * cand.puppiWeightNoLep();

  }  //pat::pat::PackedCandidate loop end

  double reliso_Puppi_withLep = val_PuppiWithLep / muon.pt();
  double reliso_Puppi_withoutlep = val_PuppiWithoutLep / muon.pt();
  double reliso_Puppi_combined = mix_fraction * reliso_Puppi_withLep + (1.0 - mix_fraction) * reliso_Puppi_withoutlep;
  return reliso_Puppi_combined;
}

bool PATMuonProducer::isNeutralHadron(long pdgid) { return std::abs(pdgid) == 130; }

bool PATMuonProducer::isChargedHadron(long pdgid) { return std::abs(pdgid) == 211; }

bool PATMuonProducer::isPhoton(long pdgid) { return pdgid == 22; }

// ParameterSet description for module
void PATMuonProducer::fillDescriptions(edm::ConfigurationDescriptions& descriptions) {
  edm::ParameterSetDescription iDesc;
  iDesc.setComment("PAT muon producer module");

  // input source
  iDesc.add<edm::InputTag>("muonSource", edm::InputTag("no default"))->setComment("input collection");

  // embedding
  iDesc.add<bool>("embedMuonBestTrack", true)->setComment("embed muon best track (global pflow)");
  iDesc.add<bool>("embedTunePMuonBestTrack", true)->setComment("embed muon best track (muon only)");
  iDesc.add<bool>("forceBestTrackEmbedding", true)
      ->setComment(
          "force embedding separately the best tracks even if they're already embedded e.g. as tracker or global "
          "tracks");
  iDesc.add<bool>("embedTrack", true)->setComment("embed external track");
  iDesc.add<bool>("embedStandAloneMuon", true)->setComment("embed external stand-alone muon");
  iDesc.add<bool>("embedCombinedMuon", false)->setComment("embed external combined muon");
  iDesc.add<bool>("embedPickyMuon", false)->setComment("embed external picky track");
  iDesc.add<bool>("embedTpfmsMuon", false)->setComment("embed external tpfms track");
  iDesc.add<bool>("embedDytMuon", false)->setComment("embed external dyt track ");

  // embedding of MET muon corrections
  iDesc.add<bool>("embedCaloMETMuonCorrs", true)->setComment("whether to add MET muon correction for caloMET or not");
  iDesc.add<edm::InputTag>("caloMETMuonCorrs", edm::InputTag("muonMETValueMapProducer", "muCorrData"))
      ->setComment("source of MET muon corrections for caloMET");
  iDesc.add<bool>("embedTcMETMuonCorrs", true)->setComment("whether to add MET muon correction for tcMET or not");
  iDesc.add<edm::InputTag>("tcMETMuonCorrs", edm::InputTag("muonTCMETValueMapProducer", "muCorrData"))
      ->setComment("source of MET muon corrections for tcMET");

  // pf specific parameters
  iDesc.add<edm::InputTag>("pfMuonSource", edm::InputTag("pfMuons"))->setComment("particle flow input collection");
  iDesc.add<bool>("useParticleFlow", false)->setComment("whether to use particle flow or not");
  iDesc.add<bool>("embedPFCandidate", false)->setComment("embed external particle flow object");
  iDesc.add<bool>("embedPfEcalEnergy", true)->setComment("add ecal energy as reconstructed by PF");

  // inverse beta computation
  iDesc.add<bool>("addInverseBeta", true)->setComment("add combined inverse beta");
  iDesc.add<edm::InputTag>("sourceInverseBeta", edm::InputTag("muons", "combined"))
      ->setComment("source of inverse beta values");

  // MC matching configurables
  iDesc.add<bool>("addGenMatch", true)->setComment("add MC matching");
  iDesc.add<bool>("embedGenMatch", false)->setComment("embed MC matched MC information");
  std::vector<edm::InputTag> emptySourceVector;
  iDesc
      .addNode(edm::ParameterDescription<edm::InputTag>("genParticleMatch", edm::InputTag(), true) xor
               edm::ParameterDescription<std::vector<edm::InputTag>>("genParticleMatch", emptySourceVector, true))
      ->setComment("input with MC match information");

  // mini-iso
  iDesc.add<bool>("computeMiniIso", false)->setComment("whether or not to compute and store electron mini-isolation");
  iDesc.add<bool>("computePuppiCombinedIso", false)
      ->setComment("whether or not to compute and store puppi combined isolation");

  iDesc.add<edm::InputTag>("pfCandsForMiniIso", edm::InputTag("packedPFCandidates"))
      ->setComment("collection to use to compute mini-iso");
  iDesc.add<std::vector<double>>("miniIsoParams", std::vector<double>())
      ->setComment("mini-iso parameters to use for muons");

  iDesc.add<bool>("addTriggerMatching", false)->setComment("add L1 and HLT matching to offline muon");

  pat::helper::KinResolutionsLoader::fillDescription(iDesc);

  // IsoDeposit configurables
  edm::ParameterSetDescription isoDepositsPSet;
  isoDepositsPSet.addOptional<edm::InputTag>("tracker");
  isoDepositsPSet.addOptional<edm::InputTag>("ecal");
  isoDepositsPSet.addOptional<edm::InputTag>("hcal");
  isoDepositsPSet.addOptional<edm::InputTag>("particle");
  isoDepositsPSet.addOptional<edm::InputTag>("pfChargedHadrons");
  isoDepositsPSet.addOptional<edm::InputTag>("pfChargedAll");
  isoDepositsPSet.addOptional<edm::InputTag>("pfPUChargedHadrons");
  isoDepositsPSet.addOptional<edm::InputTag>("pfNeutralHadrons");
  isoDepositsPSet.addOptional<edm::InputTag>("pfPhotons");
  isoDepositsPSet.addOptional<std::vector<edm::InputTag>>("user");
  iDesc.addOptional("isoDeposits", isoDepositsPSet);

  // isolation values configurables
  edm::ParameterSetDescription isolationValuesPSet;
  isolationValuesPSet.addOptional<edm::InputTag>("tracker");
  isolationValuesPSet.addOptional<edm::InputTag>("ecal");
  isolationValuesPSet.addOptional<edm::InputTag>("hcal");
  isolationValuesPSet.addOptional<edm::InputTag>("particle");
  isolationValuesPSet.addOptional<edm::InputTag>("pfChargedHadrons");
  isolationValuesPSet.addOptional<edm::InputTag>("pfChargedAll");
  isolationValuesPSet.addOptional<edm::InputTag>("pfPUChargedHadrons");
  isolationValuesPSet.addOptional<edm::InputTag>("pfNeutralHadrons");
  isolationValuesPSet.addOptional<edm::InputTag>("pfPhotons");
  iDesc.addOptional("isolationValues", isolationValuesPSet);

  iDesc.ifValue(edm::ParameterDescription<bool>("addPuppiIsolation", false, true),
                true >> (edm::ParameterDescription<edm::InputTag>(
                             "puppiIsolationChargedHadrons",
                             edm::InputTag("muonPUPPIIsolation", "h+-DR030-ThresholdVeto000-ConeVeto000"),
                             true) and
                         edm::ParameterDescription<edm::InputTag>(
                             "puppiIsolationNeutralHadrons",
                             edm::InputTag("muonPUPPIIsolation", "h0-DR030-ThresholdVeto000-ConeVeto001"),
                             true) and
                         edm::ParameterDescription<edm::InputTag>(
                             "puppiIsolationPhotons",
                             edm::InputTag("muonPUPPIIsolation", "gamma-DR030-ThresholdVeto000-ConeVeto001"),
                             true) and
                         edm::ParameterDescription<edm::InputTag>(
                             "puppiNoLeptonsIsolationChargedHadrons",
                             edm::InputTag("muonPUPPINoLeptonsIsolation", "h+-DR030-ThresholdVeto000-ConeVeto000"),
                             true) and
                         edm::ParameterDescription<edm::InputTag>(
                             "puppiNoLeptonsIsolationNeutralHadrons",
                             edm::InputTag("muonPUPPINoLeptonsIsolation", "h0-DR030-ThresholdVeto000-ConeVeto001"),
                             true) and
                         edm::ParameterDescription<edm::InputTag>(
                             "puppiNoLeptonsIsolationPhotons",
                             edm::InputTag("muonPUPPINoLeptonsIsolation", "gamma-DR030-ThresholdVeto000-ConeVeto001"),
                             true)) or
                    false >> edm::EmptyGroupDescription());

  // Efficiency configurables
  edm::ParameterSetDescription efficienciesPSet;
  efficienciesPSet.setAllowAnything();  // TODO: the pat helper needs to implement a description.
  iDesc.add("efficiencies", efficienciesPSet);
  iDesc.add<bool>("addEfficiencies", false);

  // Check to see if the user wants to add user data
  edm::ParameterSetDescription userDataPSet;
  PATUserDataHelper<Muon>::fillDescription(userDataPSet);
  iDesc.addOptional("userData", userDataPSet);

  edm::ParameterSetDescription isolationPSet;
  isolationPSet.setAllowAnything();  // TODO: the pat helper needs to implement a description.
  iDesc.add("userIsolation", isolationPSet);

  iDesc.add<bool>("embedHighLevelSelection", true)->setComment("embed high level selection");
  edm::ParameterSetDescription highLevelPSet;
  highLevelPSet.setAllowAnything();
  iDesc.addNode(edm::ParameterDescription<edm::InputTag>("beamLineSrc", edm::InputTag(), true))
      ->setComment("input with high level selection");
  iDesc.addNode(edm::ParameterDescription<edm::InputTag>("pvSrc", edm::InputTag(), true))
      ->setComment("input with high level selection");

  //descriptions.add("PATMuonProducer", iDesc);
}

// embed various impact parameters with errors
// embed high level selection
void PATMuonProducer::embedHighLevel(pat::Muon& aMuon,
                                     reco::TrackRef track,
                                     reco::TransientTrack& tt,
                                     reco::Vertex& primaryVertex,
                                     bool primaryVertexIsValid,
                                     reco::BeamSpot& beamspot,
                                     bool beamspotIsValid) {
  // Correct to PV

  // PV2D
  std::pair<bool, Measurement1D> result =
      IPTools::signedTransverseImpactParameter(tt, GlobalVector(track->px(), track->py(), track->pz()), primaryVertex);
  double d0_corr = result.second.value();
  double d0_err = primaryVertexIsValid ? result.second.error() : -1.0;
  aMuon.setDB(d0_corr, d0_err, pat::Muon::PV2D);

  // PV3D
  result = IPTools::signedImpactParameter3D(tt, GlobalVector(track->px(), track->py(), track->pz()), primaryVertex);
  d0_corr = result.second.value();
  d0_err = primaryVertexIsValid ? result.second.error() : -1.0;
  aMuon.setDB(d0_corr, d0_err, pat::Muon::PV3D);

  // Correct to beam spot
  // make a fake vertex out of beam spot
  reco::Vertex vBeamspot(beamspot.position(), beamspot.rotatedCovariance3D());

  // BS2D
  result = IPTools::signedTransverseImpactParameter(tt, GlobalVector(track->px(), track->py(), track->pz()), vBeamspot);
  d0_corr = result.second.value();
  d0_err = beamspotIsValid ? result.second.error() : -1.0;
  aMuon.setDB(d0_corr, d0_err, pat::Muon::BS2D);

  // BS3D
  result = IPTools::signedImpactParameter3D(tt, GlobalVector(track->px(), track->py(), track->pz()), vBeamspot);
  d0_corr = result.second.value();
  d0_err = beamspotIsValid ? result.second.error() : -1.0;
  aMuon.setDB(d0_corr, d0_err, pat::Muon::BS3D);

  // PVDZ
  aMuon.setDB(
      track->dz(primaryVertex.position()), std::hypot(track->dzError(), primaryVertex.zError()), pat::Muon::PVDZ);
}

#include "FWCore/Framework/interface/MakerMacros.h"

DEFINE_FWK_MODULE(PATMuonProducer);