DQMRootSource.cc

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// -*- C++ -*-
//
// Package:     FwkIO
// Class  :     DQMRootSource
// 
// Implementation:
//     [Notes on implementation]
//
// Original Author:  Chris Jones
//         Created:  Tue May  3 11:13:47 CDT 2011
//

// system include files
#include <vector>
#include <string>
#include <map>
#include <memory>
#include <list>
#include <set>
#include "TFile.h"
#include "TTree.h"
#include "TString.h"
#include "TH1.h"
#include "TH2.h"
#include "TProfile.h"

// user include files
#include "FWCore/Framework/interface/InputSource.h"
#include "FWCore/Catalog/interface/InputFileCatalog.h"
#include "FWCore/ParameterSet/interface/ParameterSet.h"
#include "DQMServices/Core/interface/DQMStore.h"
#include "DQMServices/Core/interface/MonitorElement.h"
#include "FWCore/ServiceRegistry/interface/Service.h"
#include "FWCore/MessageLogger/interface/JobReport.h"
//#include "FWCore/Utilities/interface/GlobalIdentifier.h"
#include "FWCore/Utilities/interface/EDMException.h"

#include "FWCore/Framework/interface/RunPrincipal.h"
#include "FWCore/Framework/interface/LuminosityBlockPrincipal.h"

#include "FWCore/Framework/interface/Run.h"
#include "FWCore/Framework/interface/LuminosityBlock.h"
#include "DataFormats/Provenance/interface/LuminosityBlockID.h"
#include "DataFormats/Provenance/interface/LuminosityBlockRange.h"

#include "FWCore/ParameterSet/interface/ConfigurationDescriptions.h"
#include "FWCore/ParameterSet/interface/ParameterSetDescription.h"

#include "FWCore/Framework/interface/InputSourceMacros.h"
#include "FWCore/Framework/interface/FileBlock.h"
#include "DataFormats/Provenance/interface/EventRange.h"
#include "DataFormats/Provenance/interface/EventID.h"

#include "FWCore/MessageLogger/interface/MessageLogger.h"
#include "FWCore/Utilities/interface/TimeOfDay.h"

#include "DataFormats/Provenance/interface/ProcessHistory.h"
#include "DataFormats/Provenance/interface/ProcessHistoryID.h"
#include "DataFormats/Provenance/interface/ProcessHistoryRegistry.h"
#include "FWCore/ParameterSet/interface/Registry.h"

#include "FWCore/Utilities/interface/Digest.h"
#include "FWCore/Utilities/interface/InputType.h"

#include "format.h"

namespace {
  //adapter functions
  MonitorElement* createElement(DQMStore& iStore, const char* iName, TH1F* iHist) {
    //std::cout <<"create: hist size "<<iName <<" "<<iHist->GetEffectiveEntries()<<std::endl;
    return iStore.book1D(iName, iHist);
  }
  //NOTE: the merge logic comes from DataFormats/Histograms/interface/MEtoEDMFormat.h
  void mergeTogether(TH1* iOriginal,TH1* iToAdd) {
    if(iOriginal->TestBit(TH1::kCanRebin)==true && iToAdd->TestBit(TH1::kCanRebin) ==true) {
      TList list;
      list.Add(iToAdd);
      if( -1 == iOriginal->Merge(&list)) {
        edm::LogError("MergeFailure")<<"Failed to merge DQM element "<<iOriginal->GetName();
      }
    } else {
      if (iOriginal->GetNbinsX() == iToAdd->GetNbinsX() &&
          iOriginal->GetXaxis()->GetXmin() == iToAdd->GetXaxis()->GetXmin() &&
          iOriginal->GetXaxis()->GetXmax() == iToAdd->GetXaxis()->GetXmax() &&
          iOriginal->GetNbinsY() == iToAdd->GetNbinsY() &&
          iOriginal->GetYaxis()->GetXmin() == iToAdd->GetYaxis()->GetXmin() &&
          iOriginal->GetYaxis()->GetXmax() == iToAdd->GetYaxis()->GetXmax() &&
          iOriginal->GetNbinsZ() == iToAdd->GetNbinsZ() &&
          iOriginal->GetZaxis()->GetXmin() == iToAdd->GetZaxis()->GetXmin() &&
          iOriginal->GetZaxis()->GetXmax() == iToAdd->GetZaxis()->GetXmax() &&
      MonitorElement::CheckBinLabels(iOriginal->GetXaxis(),iToAdd->GetXaxis()) &&
      MonitorElement::CheckBinLabels(iOriginal->GetYaxis(),iToAdd->GetYaxis()) &&
      MonitorElement::CheckBinLabels(iOriginal->GetZaxis(),iToAdd->GetZaxis())) {
    iOriginal->Add(iToAdd);
      } else {
    edm::LogError("MergeFailure")<<"Found histograms with different axis limits or different labels'"<<iOriginal->GetName()<<"' not merged.";
      } 
    }
  }
  
  void mergeWithElement(MonitorElement* iElement, TH1F* iHist) {
    //std::cout <<"merge: hist size "<<iElement->getName() <<" "<<iHist->GetEffectiveEntries()<<std::endl;
    mergeTogether(iElement->getTH1F(),iHist);
  }
  MonitorElement* createElement(DQMStore& iStore, const char* iName, TH1S* iHist) {
    return iStore.book1S(iName, iHist);
  }
  void mergeWithElement(MonitorElement* iElement, TH1S* iHist) {
    mergeTogether(iElement->getTH1S(),iHist);
  }  
  MonitorElement* createElement(DQMStore& iStore, const char* iName, TH1D* iHist) {
    return iStore.book1DD(iName, iHist);
  }
  void mergeWithElement(MonitorElement* iElement, TH1D* iHist) {
    mergeTogether(iElement->getTH1D(),iHist);
  }
  MonitorElement* createElement(DQMStore& iStore, const char* iName, TH2F* iHist) {
    return iStore.book2D(iName, iHist);
  }
  void mergeWithElement(MonitorElement* iElement, TH2F* iHist) {
    mergeTogether(iElement->getTH2F(),iHist);
  }
  MonitorElement* createElement(DQMStore& iStore, const char* iName, TH2S* iHist) {
    return iStore.book2S(iName, iHist);
  }
  void mergeWithElement(MonitorElement* iElement, TH2S* iHist) {
    mergeTogether(iElement->getTH2S(),iHist);
  }  
  MonitorElement* createElement(DQMStore& iStore, const char* iName, TH2D* iHist) {
    return iStore.book2DD(iName, iHist);
  }
  void mergeWithElement(MonitorElement* iElement, TH2D* iHist) {
    mergeTogether(iElement->getTH2D(),iHist);
  }
  MonitorElement* createElement(DQMStore& iStore, const char* iName, TH3F* iHist) {
    return iStore.book3D(iName, iHist);
  }
  void mergeWithElement(MonitorElement* iElement, TH3F* iHist) {
    mergeTogether(iElement->getTH3F(),iHist);
  }
  MonitorElement* createElement(DQMStore& iStore, const char* iName, TProfile* iHist) {
    return iStore.bookProfile(iName, iHist);
  }
  void mergeWithElement(MonitorElement* iElement, TProfile* iHist) {
    mergeTogether(iElement->getTProfile(),iHist);
  }
  MonitorElement* createElement(DQMStore& iStore, const char* iName, TProfile2D* iHist) {
    return iStore.bookProfile2D(iName, iHist);
  }
  void mergeWithElement(MonitorElement* iElement, TProfile2D* iHist) {
    mergeTogether(iElement->getTProfile2D(),iHist);
  }

  MonitorElement* createElement(DQMStore& iStore, const char* iName, Long64_t& iValue) {
    MonitorElement* e = iStore.bookInt(iName);
    e->Fill(iValue);
    return e;
  }

  //NOTE: the merge logic comes from DataFormats/Histograms/interface/MEtoEDMFormat.h
  void mergeWithElement(MonitorElement* iElement, Long64_t& iValue) {
    const std::string& name = iElement->getFullname();
    if(name.find("EventInfo/processedEvents") != std::string::npos) {
      iElement->Fill(iValue+iElement->getIntValue());
    } else if(name.find("EventInfo/iEvent") != std::string::npos ||
         name.find("EventInfo/iLumiSection") != std::string::npos) {
        if(iValue > iElement->getIntValue()) {
          iElement->Fill(iValue);
        }
    }
    else {
      iElement->Fill(iValue);
    }
  }

  MonitorElement* createElement(DQMStore& iStore, const char* iName, double& iValue) {
    MonitorElement* e = iStore.bookFloat(iName);
    e->Fill(iValue);
    return e;
  }
  void mergeWithElement(MonitorElement* iElement, double& iValue) {
    //no merging, take the last one
    iElement->Fill(iValue);
  }
  MonitorElement* createElement(DQMStore& iStore, const char* iName, std::string* iValue) {
    return iStore.bookString(iName,*iValue);
  }
  void mergeWithElement(MonitorElement* iElement, std::string* iValue) {
    //no merging, take the last one
    iElement->Fill(*iValue);
  }

  void splitName(const std::string& iFullName, std::string& oPath,const char*& oName) {
    oPath = iFullName;
    size_t index = oPath.find_last_of('/');
    if(index == std::string::npos) {
      oPath = std::string();
      oName = iFullName.c_str();
    } else {
      oPath.resize(index);
      oName = iFullName.c_str()+index+1;
    }
  }

  struct RunLumiToRange {
    unsigned int m_run, m_lumi,m_historyIDIndex;
    ULong64_t m_beginTime;
    ULong64_t m_endTime;
    ULong64_t m_firstIndex, m_lastIndex; //last is inclusive
    unsigned int m_type; //A value in TypeIndex
  };

  class TreeReaderBase {
    public:
      TreeReaderBase() {}
      virtual ~TreeReaderBase() {}

      MonitorElement* read(ULong64_t iIndex, DQMStore& iStore, bool iIsLumi){
        return doRead(iIndex,iStore,iIsLumi);
      }
      virtual void setTree(TTree* iTree) =0;
    protected:
      TTree* m_tree;
    private:
      virtual MonitorElement* doRead(ULong64_t iIndex, DQMStore& iStore, bool iIsLumi)=0;
  };

  template<class T>
    class TreeObjectReader: public TreeReaderBase {
      public:
        TreeObjectReader():m_tree(0),m_fullName(0),m_buffer(0),m_tag(0){
        }
        virtual MonitorElement* doRead(ULong64_t iIndex, DQMStore& iStore, bool iIsLumi) override {
          m_tree->GetEntry(iIndex);
          MonitorElement* element = iStore.get(*m_fullName);
          if(0 == element) {
            std::string path;
            const char* name;
            splitName(*m_fullName, path,name);
            iStore.setCurrentFolder(path);
            element = createElement(iStore,name,m_buffer);
            if(iIsLumi) { element->setLumiFlag();}
          } else {
            mergeWithElement(element,m_buffer);
          }
          if(0!= m_tag) {
            iStore.tag(element,m_tag);
          }
          return element;
        }
        virtual void setTree(TTree* iTree) override  {
          m_tree = iTree;
          m_tree->SetBranchAddress(kFullNameBranch,&m_fullName);
          m_tree->SetBranchAddress(kFlagBranch,&m_tag);
          m_tree->SetBranchAddress(kValueBranch,&m_buffer);
        }
      private:
        TTree* m_tree;
        std::string* m_fullName;
        T* m_buffer;
        uint32_t m_tag;
    };

  template<class T>
    class TreeSimpleReader : public TreeReaderBase {
      public:
        TreeSimpleReader():m_tree(0),m_fullName(0),m_buffer(0),m_tag(0){
        }
        virtual MonitorElement* doRead(ULong64_t iIndex, DQMStore& iStore,bool iIsLumi) override {
          m_tree->GetEntry(iIndex);
          MonitorElement* element = iStore.get(*m_fullName);
          if(0 == element) {
            std::string path;
            const char* name;
            splitName(*m_fullName, path,name);
            iStore.setCurrentFolder(path);
            element = createElement(iStore,name,m_buffer);
            if(iIsLumi) { element->setLumiFlag();}
          } else {
            mergeWithElement(element, m_buffer);
          }
          if(0!=m_tag) {
            iStore.tag(element,m_tag);
          }
          return element;
        }
        virtual void setTree(TTree* iTree) override  {
          m_tree = iTree;
          m_tree->SetBranchAddress(kFullNameBranch,&m_fullName);
          m_tree->SetBranchAddress(kFlagBranch,&m_tag);
          m_tree->SetBranchAddress(kValueBranch,&m_buffer);
        }
      private:
        TTree* m_tree;
        std::string* m_fullName;
        T m_buffer;
        uint32_t m_tag;
    };

}

class DQMRootSource : public edm::InputSource
{

   public:
      DQMRootSource(edm::ParameterSet const&, const edm::InputSourceDescription&);
      virtual ~DQMRootSource();

      // ---------- const member functions ---------------------

      // ---------- static member functions --------------------

      // ---------- member functions ---------------------------
      static void fillDescriptions(edm::ConfigurationDescriptions& descriptions);

   private:

      DQMRootSource(const DQMRootSource&); // stop default

      class RunPHIDKey {
      public:
        RunPHIDKey(edm::ProcessHistoryID const& phid, unsigned int run) : 
          processHistoryID_(phid), run_(run) { }
        edm::ProcessHistoryID const& processHistoryID() const { return processHistoryID_; }
        unsigned int run() const { return run_; }
        bool operator<(RunPHIDKey const& right) const {
          if (processHistoryID_ == right.processHistoryID()) {
            return run_ < right.run();
          }
          return processHistoryID_ < right.processHistoryID();
        }
      private:
        edm::ProcessHistoryID processHistoryID_;
        unsigned int run_;
      };

      class RunLumiPHIDKey {
      public:
        RunLumiPHIDKey(edm::ProcessHistoryID const& phid, unsigned int run, unsigned int lumi) : 
          processHistoryID_(phid), run_(run), lumi_(lumi) { }
        edm::ProcessHistoryID const& processHistoryID() const { return processHistoryID_; }
        unsigned int run() const { return run_; }
        unsigned int lumi() const { return lumi_; }
        bool operator<(RunLumiPHIDKey const& right) const {
          if (processHistoryID_ == right.processHistoryID()) {
            if (run_ == right.run()) {
              return lumi_ < right.lumi();
            }
            return run_ < right.run();
          }
          return processHistoryID_ < right.processHistoryID();
        }
      private:
        edm::ProcessHistoryID processHistoryID_;
        unsigned int run_;
        unsigned int lumi_;
      };

      virtual edm::InputSource::ItemType getNextItemType() override;
      //NOTE: the following is really read next run auxiliary
      virtual std::shared_ptr<edm::RunAuxiliary> readRunAuxiliary_() override ;
      virtual std::shared_ptr<edm::LuminosityBlockAuxiliary> readLuminosityBlockAuxiliary_() override ;
      virtual void readRun_(edm::RunPrincipal& rpCache) override;
      virtual void readLuminosityBlock_(edm::LuminosityBlockPrincipal& lbCache) override;
      virtual void readEvent_(edm::EventPrincipal&) override ;
      
      virtual std::unique_ptr<edm::FileBlock> readFile_() override;
      virtual void closeFile_() override;
      
      void logFileAction(char const* msg, char const* fileName) const;
      
      void readNextItemType();
      bool setupFile(unsigned int iIndex);
      void readElements();
      bool skipIt(edm::RunNumber_t, edm::LuminosityBlockNumber_t) const;
      
      const DQMRootSource& operator=(const DQMRootSource&); // stop default

      // ---------- member data --------------------------------
      edm::InputFileCatalog m_catalog;
      edm::RunAuxiliary m_runAux;
      edm::LuminosityBlockAuxiliary m_lumiAux;
      edm::InputSource::ItemType m_nextItemType;

      size_t m_fileIndex;
      size_t m_presentlyOpenFileIndex;
      std::list<unsigned int>::iterator m_nextIndexItr;
      std::list<unsigned int>::iterator m_presentIndexItr;
      std::vector<RunLumiToRange> m_runlumiToRange;
      std::auto_ptr<TFile> m_file;
      std::vector<TTree*> m_trees;
      std::vector<boost::shared_ptr<TreeReaderBase> > m_treeReaders;
      
      std::list<unsigned int> m_orderedIndices;
      edm::ProcessHistoryID m_lastSeenReducedPHID;
      unsigned int m_lastSeenRun;
      edm::ProcessHistoryID m_lastSeenReducedPHID2;
      unsigned int m_lastSeenRun2;
      unsigned int m_lastSeenLumi2;
      unsigned int m_filterOnRun;
      bool m_skipBadFiles;
      std::vector<edm::LuminosityBlockRange> m_lumisToProcess;
      std::vector<edm::RunNumber_t> m_runsToProcess;
 
      bool m_justOpenedFileSoNeedToGenerateRunTransition;
      bool m_shouldReadMEs;
      std::set<MonitorElement*> m_lumiElements;
      std::set<MonitorElement*> m_runElements;
      std::vector<edm::ProcessHistoryID> m_historyIDs;
      std::vector<edm::ProcessHistoryID> m_reducedHistoryIDs;
      
      edm::JobReport::Token m_jrToken;
};

//
// constants, enums and typedefs
//

//
// static data member definitions
//

void
DQMRootSource::fillDescriptions(edm::ConfigurationDescriptions& descriptions) {
  edm::ParameterSetDescription desc;
  desc.addUntracked<std::vector<std::string> >("fileNames")
    ->setComment("Names of files to be processed.");
  desc.addUntracked<unsigned int>("filterOnRun",0)
    ->setComment("Just limit the process to the selected run.");
  desc.addUntracked<bool>("skipBadFiles",false)
    ->setComment("Skip the file if it is not valid");
  desc.addUntracked<std::string>("overrideCatalog",std::string())
    ->setComment("An alternate file catalog to use instead of the standard site one.");
  std::vector<edm::LuminosityBlockRange> defaultLumis;
  desc.addUntracked<std::vector<edm::LuminosityBlockRange> >("lumisToProcess",defaultLumis)
    ->setComment("Skip any lumi inside the specified run:lumi range.");

  descriptions.addDefault(desc);
}
//
// constructors and destructor
//
DQMRootSource::DQMRootSource(edm::ParameterSet const& iPSet, const edm::InputSourceDescription& iDesc):
  edm::InputSource(iPSet,iDesc),
  m_catalog(iPSet.getUntrackedParameter<std::vector<std::string> >("fileNames"),
            iPSet.getUntrackedParameter<std::string>("overrideCatalog")),
  m_nextItemType(edm::InputSource::IsFile),
  m_fileIndex(0),
  m_presentlyOpenFileIndex(0),
  m_trees(kNIndicies,static_cast<TTree*>(0)),
  m_treeReaders(kNIndicies,boost::shared_ptr<TreeReaderBase>()),
  m_lastSeenReducedPHID(),
  m_lastSeenRun(0),
  m_lastSeenReducedPHID2(),
  m_lastSeenRun2(0),
  m_lastSeenLumi2(0),
  m_filterOnRun(iPSet.getUntrackedParameter<unsigned int>("filterOnRun", 0)),
  m_skipBadFiles(iPSet.getUntrackedParameter<bool>("skipBadFiles", false)),
  m_lumisToProcess(iPSet.getUntrackedParameter<std::vector<edm::LuminosityBlockRange> >("lumisToProcess",std::vector<edm::LuminosityBlockRange>())),
  m_justOpenedFileSoNeedToGenerateRunTransition(false),
  m_shouldReadMEs(true)
{
  edm::sortAndRemoveOverlaps(m_lumisToProcess);
  for(std::vector<edm::LuminosityBlockRange>::const_iterator itr = m_lumisToProcess.begin(); itr!=m_lumisToProcess.end(); ++itr)
    m_runsToProcess.push_back(itr->startRun());

  if(m_fileIndex ==m_catalog.fileNames().size()) {
    m_nextItemType=edm::InputSource::IsStop;
  } else{
    m_treeReaders[kIntIndex].reset(new TreeSimpleReader<Long64_t>());
    m_treeReaders[kFloatIndex].reset(new TreeSimpleReader<double>());
    m_treeReaders[kStringIndex].reset(new TreeObjectReader<std::string>());
    m_treeReaders[kTH1FIndex].reset(new TreeObjectReader<TH1F>());
    m_treeReaders[kTH1SIndex].reset(new TreeObjectReader<TH1S>());
    m_treeReaders[kTH1DIndex].reset(new TreeObjectReader<TH1D>());
    m_treeReaders[kTH2FIndex].reset(new TreeObjectReader<TH2F>());
    m_treeReaders[kTH2SIndex].reset(new TreeObjectReader<TH2S>());
    m_treeReaders[kTH2DIndex].reset(new TreeObjectReader<TH2D>());
    m_treeReaders[kTH3FIndex].reset(new TreeObjectReader<TH3F>());
    m_treeReaders[kTProfileIndex].reset(new TreeObjectReader<TProfile>());
    m_treeReaders[kTProfile2DIndex].reset(new TreeObjectReader<TProfile2D>());
  }
}

// DQMRootSource::DQMRootSource(const DQMRootSource& rhs)
// {
//    // do actual copying here;
// }

DQMRootSource::~DQMRootSource()
{
  if(m_file.get() != 0 && m_file->IsOpen()) {
    m_file->Close();
    logFileAction("  Closed file ", m_catalog.fileNames()[m_presentlyOpenFileIndex].c_str());
  }
}

//
// assignment operators
//
// const DQMRootSource& DQMRootSource::operator=(const DQMRootSource& rhs)
// {
//   //An exception safe implementation is
//   DQMRootSource temp(rhs);
//   swap(rhs);
//
//   return *this;
// }

//
// member functions
//
void DQMRootSource::readEvent_(edm::EventPrincipal&)
{
  //std::cout << "readEvent_" << std::endl;
}

edm::InputSource::ItemType DQMRootSource::getNextItemType()
{
  //std::cout <<"getNextItemType "<<m_nextItemType<<std::endl;
  return m_nextItemType;
}

std::shared_ptr<edm::RunAuxiliary> DQMRootSource::readRunAuxiliary_()
{
  //std::cout <<"readRunAuxiliary_"<<std::endl;
  assert(m_nextIndexItr != m_orderedIndices.end());
  RunLumiToRange runLumiRange = m_runlumiToRange[*m_nextIndexItr];

  //NOTE: the setBeginTime and setEndTime functions of RunAuxiliary only work if the previous value was invalid
  // therefore we must copy
  m_runAux = edm::RunAuxiliary(runLumiRange.m_run,edm::Timestamp(runLumiRange.m_beginTime),edm::Timestamp(runLumiRange.m_endTime));
  assert(m_historyIDs.size() > runLumiRange.m_historyIDIndex);
  //std::cout <<"readRunAuxiliary_ "<<m_historyIDs[runLumiRange.m_historyIDIndex]<<std::endl;
  m_runAux.setProcessHistoryID(m_historyIDs[runLumiRange.m_historyIDIndex]);    
  return std::make_shared<edm::RunAuxiliary>(m_runAux);
}

std::shared_ptr<edm::LuminosityBlockAuxiliary>
DQMRootSource::readLuminosityBlockAuxiliary_()
{
  //std::cout <<"readLuminosityBlockAuxiliary_"<<std::endl;
  assert(m_nextIndexItr != m_orderedIndices.end());
  const RunLumiToRange runLumiRange = m_runlumiToRange[*m_nextIndexItr];
  m_lumiAux = edm::LuminosityBlockAuxiliary(edm::LuminosityBlockID(runLumiRange.m_run,runLumiRange.m_lumi),
                                            edm::Timestamp(runLumiRange.m_beginTime),
                                            edm::Timestamp(runLumiRange.m_endTime));
  assert(m_historyIDs.size() > runLumiRange.m_historyIDIndex);
  //std::cout <<"lumi "<<m_lumiAux.beginTime().value()<<" "<<runLumiRange.m_beginTime<<std::endl;
  m_lumiAux.setProcessHistoryID(m_historyIDs[runLumiRange.m_historyIDIndex]);    

  return std::make_shared<edm::LuminosityBlockAuxiliary>(m_lumiAux);
}

void
DQMRootSource::readRun_(edm::RunPrincipal& rpCache)
{
  assert(m_presentIndexItr != m_orderedIndices.end());
  RunLumiToRange runLumiRange = m_runlumiToRange[*m_presentIndexItr];

  m_justOpenedFileSoNeedToGenerateRunTransition = false;
  unsigned int runID =rpCache.id().run();
  assert(runID == runLumiRange.m_run);

  m_shouldReadMEs = (m_filterOnRun == 0 ||
                     (m_filterOnRun != 0 && m_filterOnRun == runID)); 
  //   std::cout <<"readRun_"<<std::endl;
  //   std::cout <<"m_shouldReadMEs " << m_shouldReadMEs <<std::endl;

  //NOTE: need to reset all run elements at this point
  if( m_lastSeenRun != runID ||
      m_lastSeenReducedPHID != m_reducedHistoryIDs.at(runLumiRange.m_historyIDIndex) ) {
    if (m_shouldReadMEs) {
      edm::Service<DQMStore> store;
      std::vector<MonitorElement*> allMEs = (*store).getAllContents("");
      for(auto const& ME : allMEs) {
        // We do not want to reset here Lumi products, since a dedicated
        // resetting is done at every lumi transition.
        if (ME->getLumiFlag()) continue;
    if ( !(*store).isCollate() )
      ME->Reset();
      }
    }
    m_lastSeenReducedPHID = m_reducedHistoryIDs.at(runLumiRange.m_historyIDIndex);
    m_lastSeenRun = runID;
  }

  readNextItemType();

  //NOTE: it is possible to have a Run when all we have stored is lumis
  if(runLumiRange.m_lumi == 0) {
    readElements();
  }


  edm::Service<edm::JobReport> jr;
  jr->reportInputRunNumber(rpCache.id().run());

  rpCache.fillRunPrincipal(processHistoryRegistryForUpdate());
}


void
DQMRootSource::readLuminosityBlock_( edm::LuminosityBlockPrincipal& lbCache)
{
  assert(m_presentIndexItr != m_orderedIndices.end());
  RunLumiToRange runLumiRange = m_runlumiToRange[*m_presentIndexItr];
  assert(runLumiRange.m_run == lbCache.id().run());
  assert(runLumiRange.m_lumi == lbCache.id().luminosityBlock());

  //NOTE: need to reset all lumi block elements at this point
  if( ( m_lastSeenLumi2 != runLumiRange.m_lumi ||
    m_lastSeenRun2 != runLumiRange.m_run ||
    m_lastSeenReducedPHID2 != m_reducedHistoryIDs.at(runLumiRange.m_historyIDIndex) ) 
      && m_shouldReadMEs) {
    
    edm::Service<DQMStore> store;
    std::vector<MonitorElement*> allMEs = (*store).getAllContents("");
    for(auto const& ME : allMEs) {
      // We do not want to reset Run Products here!
      if (ME->getLumiFlag()) {
    ME->Reset();
      }
    }
    m_lastSeenReducedPHID2 = m_reducedHistoryIDs.at(runLumiRange.m_historyIDIndex);
    m_lastSeenRun2 = runLumiRange.m_run;
    m_lastSeenLumi2 = runLumiRange.m_lumi;
  }
  
  readNextItemType();
  readElements();

  edm::Service<edm::JobReport> jr;
  jr->reportInputLumiSection(lbCache.id().run(),lbCache.id().luminosityBlock());

  lbCache.fillLuminosityBlockPrincipal(processHistoryRegistryForUpdate());

}

std::unique_ptr<edm::FileBlock>
DQMRootSource::readFile_() {
  auto const numFiles = m_catalog.fileNames().size();
  while(m_fileIndex < numFiles && not setupFile(m_fileIndex++)) {}

  if(m_file.get() == nullptr) {
    //last file in list was bad
    m_nextItemType = edm::InputSource::IsStop;
    return std::unique_ptr<edm::FileBlock>(new edm::FileBlock);
  }

  readNextItemType();
  while (m_presentIndexItr != m_orderedIndices.end() && skipIt(m_runlumiToRange[*m_presentIndexItr].m_run,m_runlumiToRange[*m_presentIndexItr].m_lumi))
    ++m_presentIndexItr;

  edm::Service<edm::JobReport> jr;
  m_jrToken = jr->inputFileOpened(m_catalog.fileNames()[m_fileIndex-1],
      m_catalog.logicalFileNames()[m_fileIndex-1],
      std::string(),
      std::string(),
      "DQMRootSource",
      "source",
      m_file->GetUUID().AsString(),//edm::createGlobalIdentifier(),
      std::vector<std::string>()
      );

  return std::unique_ptr<edm::FileBlock>(new edm::FileBlock);
}

void
DQMRootSource::closeFile_() {
  if(m_file.get()==nullptr) { return; }
  edm::Service<edm::JobReport> jr;
  jr->inputFileClosed(edm::InputType::Primary, m_jrToken);
}

void DQMRootSource::readElements() {
  edm::Service<DQMStore> store;
  RunLumiToRange runLumiRange = m_runlumiToRange[*m_presentIndexItr];
  bool shouldContinue = false;
  do
  {
    shouldContinue = false;
    ++m_presentIndexItr;
    while (m_presentIndexItr != m_orderedIndices.end() && skipIt(m_runlumiToRange[*m_presentIndexItr].m_run,m_runlumiToRange[*m_presentIndexItr].m_lumi))
      ++m_presentIndexItr;

    if(runLumiRange.m_type == kNoTypesStored) {continue;}
    boost::shared_ptr<TreeReaderBase> reader = m_treeReaders[runLumiRange.m_type];
    ULong64_t index = runLumiRange.m_firstIndex;
    ULong64_t endIndex = runLumiRange.m_lastIndex+1;
    for (; index != endIndex; ++index)
    {
      bool isLumi = runLumiRange.m_lumi !=0;
      if (m_shouldReadMEs)
        reader->read(index,*store,isLumi);

      //std::cout << runLumiRange.m_run << " " << runLumiRange.m_lumi <<" "<<index<< " " << runLumiRange.m_type << std::endl;
    }
    if (m_presentIndexItr != m_orderedIndices.end())
    {
      //are there more parts to this same run/lumi?
      const RunLumiToRange nextRunLumiRange = m_runlumiToRange[*m_presentIndexItr];
      //continue to the next item if that item is either
      if ( (m_reducedHistoryIDs.at(nextRunLumiRange.m_historyIDIndex) == m_reducedHistoryIDs.at(runLumiRange.m_historyIDIndex)) &&
          (nextRunLumiRange.m_run == runLumiRange.m_run) &&
          (nextRunLumiRange.m_lumi == runLumiRange.m_lumi) )
      {
        shouldContinue= true;
        runLumiRange = nextRunLumiRange;
      }
    }
  } while(shouldContinue);
}

void DQMRootSource::readNextItemType()
{
  //Do the work of actually figuring out where next to go

  assert (m_nextIndexItr != m_orderedIndices.end());
  RunLumiToRange runLumiRange = m_runlumiToRange[*m_nextIndexItr];

  if (m_nextItemType != edm::InputSource::IsFile) {
    if (runLumiRange.m_lumi != 0 && m_nextItemType == edm::InputSource::IsRun) {
      m_nextItemType = edm::InputSource::IsLumi;
      return;
    }
    ++m_nextIndexItr;
  }
  else
  {
    //NOTE: the following makes the iterator not be advanced in the
    //do while loop below.
    runLumiRange.m_run=0;
  }

  bool shouldContinue = false;
  do
  {
    shouldContinue = false;
    while (m_nextIndexItr != m_orderedIndices.end() && skipIt(m_runlumiToRange[*m_nextIndexItr].m_run,m_runlumiToRange[*m_nextIndexItr].m_lumi))
      ++m_nextIndexItr;

    if (m_nextIndexItr == m_orderedIndices.end())
    {
      //go to next file
      m_nextItemType = edm::InputSource::IsFile;
      //std::cout <<"going to next file"<<std::endl;
      if(m_fileIndex == m_catalog.fileNames().size()) {
        m_nextItemType = edm::InputSource::IsStop;
      }       
      break;
    }
    const RunLumiToRange nextRunLumiRange = m_runlumiToRange[*m_nextIndexItr];
    //continue to the next item if that item is the same run or lumi as we just did
    if(  (m_reducedHistoryIDs.at(nextRunLumiRange.m_historyIDIndex) == m_reducedHistoryIDs.at(runLumiRange.m_historyIDIndex) ) &&
         (nextRunLumiRange.m_run == runLumiRange.m_run) &&
         (nextRunLumiRange.m_lumi == runLumiRange.m_lumi) ) {
      shouldContinue= true;
      ++m_nextIndexItr;
      //std::cout <<"advancing " <<nextRunLumiRange.m_run<<" "<<nextRunLumiRange.m_lumi<<std::endl;
    } 
  } while(shouldContinue);
  
  if(m_nextIndexItr != m_orderedIndices.end()) {
    if (m_justOpenedFileSoNeedToGenerateRunTransition ||
        m_lastSeenRun != m_runlumiToRange[*m_nextIndexItr].m_run ||
        m_lastSeenReducedPHID != m_reducedHistoryIDs.at(m_runlumiToRange[*m_nextIndexItr].m_historyIDIndex) ) {
      m_nextItemType = edm::InputSource::IsRun;
    } else {
        m_nextItemType = edm::InputSource::IsLumi;
    }
  }
}

bool
DQMRootSource::setupFile(unsigned int iIndex)
{
  if(m_file.get() != 0 && iIndex > 0) {
    m_file->Close();
    logFileAction("  Closed file ", m_catalog.fileNames()[iIndex-1].c_str());
  }
  logFileAction("  Initiating request to open file ", m_catalog.fileNames()[iIndex].c_str());
  m_presentlyOpenFileIndex = iIndex;
  m_file.reset();
  std::auto_ptr<TFile> newFile;
  try {
    newFile = std::auto_ptr<TFile>(TFile::Open(m_catalog.fileNames()[iIndex].c_str()));
  } catch(cms::Exception const& e) {
    if(!m_skipBadFiles) {
      edm::Exception ex(edm::errors::FileOpenError,"",e);
      ex.addContext("Opening DQM Root file");
      ex <<"\nInput file " << m_catalog.fileNames()[iIndex] << " was not found, could not be opened, or is corrupted.\n";
      throw ex;
    }
    return 0;
  }
  if(not newFile->IsZombie()) {  
    logFileAction("  Successfully opened file ", m_catalog.fileNames()[iIndex].c_str());
  } else {
    if(!m_skipBadFiles) {
      edm::Exception ex(edm::errors::FileOpenError);
      ex<<"Input file "<<m_catalog.fileNames()[iIndex].c_str() <<" could not be opened.\n";
      ex.addContext("Opening DQM Root file");
      throw ex;
    }
    return 0;
  }
  //Check file format version, which is encoded in the Title of the TFile
  if(0 != strcmp(newFile->GetTitle(),"1")) {
    edm::Exception ex(edm::errors::FileReadError);
    ex<<"Input file "<<m_catalog.fileNames()[iIndex].c_str() <<" does not appear to be a DQM Root file.\n";
  }
  
  //Get meta Data
  TDirectory* metaDir = newFile->GetDirectory(kMetaDataDirectoryAbsolute);
  if(0==metaDir) {
    if(!m_skipBadFiles) {
      edm::Exception ex(edm::errors::FileReadError);
      ex<<"Input file "<<m_catalog.fileNames()[iIndex].c_str() <<" appears to be corrupted since it does not have the proper internal structure.\n"
    " Check to see if the file was closed properly.\n";    
      ex.addContext("Opening DQM Root file");
      throw ex;    
    }
    else {return 0;}
  }
  m_file = newFile; //passed all tests so now we want to use this file
  TTree* parameterSetTree = dynamic_cast<TTree*>(metaDir->Get(kParameterSetTree));
  assert(0!=parameterSetTree);

  edm::pset::Registry* psr = edm::pset::Registry::instance();
  assert(0!=psr);
  {
    std::string blob;
    std::string* pBlob = &blob;
    parameterSetTree->SetBranchAddress(kParameterSetBranch,&pBlob);
    for(unsigned int index = 0; index != parameterSetTree->GetEntries();++index)
    {
      parameterSetTree->GetEntry(index);
      edm::ParameterSet::registerFromString(blob);
    } 
  }

  {
    TTree* processHistoryTree = dynamic_cast<TTree*>(metaDir->Get(kProcessHistoryTree));
    assert(0!=processHistoryTree);
    unsigned int phIndex = 0;
    processHistoryTree->SetBranchAddress(kPHIndexBranch,&phIndex);
    std::string processName;
    std::string* pProcessName = &processName;
    processHistoryTree->SetBranchAddress(kProcessConfigurationProcessNameBranch,&pProcessName);
    std::string parameterSetIDBlob;
    std::string* pParameterSetIDBlob = &parameterSetIDBlob;
    processHistoryTree->SetBranchAddress(kProcessConfigurationParameterSetIDBranch,&pParameterSetIDBlob);
    std::string releaseVersion;
    std::string* pReleaseVersion = &releaseVersion;
    processHistoryTree->SetBranchAddress(kProcessConfigurationReleaseVersion,&pReleaseVersion);
    std::string passID;
    std::string* pPassID = &passID;
    processHistoryTree->SetBranchAddress(kProcessConfigurationPassID,&pPassID);

    edm::ProcessHistoryRegistry& phr = processHistoryRegistryUpdate();
    std::vector<edm::ProcessConfiguration> configs;
    configs.reserve(5);
    m_historyIDs.clear();
    m_reducedHistoryIDs.clear();
    for(unsigned int i=0; i != processHistoryTree->GetEntries(); ++i) {
      processHistoryTree->GetEntry(i);
      if(phIndex==0) {
        if(not configs.empty()) {
          edm::ProcessHistory ph(configs);
          m_historyIDs.push_back(ph.id());
          phr.registerProcessHistory(ph);
          m_reducedHistoryIDs.push_back(phr.reducedProcessHistoryID(ph.id()));
        }
        configs.clear();
      }
      edm::ParameterSetID psetID(parameterSetIDBlob);
      edm::ProcessConfiguration pc(processName, psetID,releaseVersion,passID);
      configs.push_back(pc);
    }
    if(not configs.empty()) {
      edm::ProcessHistory ph(configs);
      m_historyIDs.push_back(ph.id());
      phr.registerProcessHistory(ph);
      m_reducedHistoryIDs.push_back(phr.reducedProcessHistoryID(ph.id()));
      //std::cout <<"inserted "<<ph.id()<<std::endl;
    }
  }

  //Setup the indices
  TTree* indicesTree = dynamic_cast<TTree*>(m_file->Get(kIndicesTree));
  assert(0!=indicesTree);

  m_runlumiToRange.clear();
  m_runlumiToRange.reserve(indicesTree->GetEntries());
  m_orderedIndices.clear();

  RunLumiToRange temp;
  indicesTree->SetBranchAddress(kRunBranch,&temp.m_run);
  indicesTree->SetBranchAddress(kLumiBranch,&temp.m_lumi);
  indicesTree->SetBranchAddress(kBeginTimeBranch,&temp.m_beginTime);
  indicesTree->SetBranchAddress(kEndTimeBranch,&temp.m_endTime);
  indicesTree->SetBranchAddress(kProcessHistoryIndexBranch,&temp.m_historyIDIndex);
  indicesTree->SetBranchAddress(kTypeBranch,&temp.m_type);
  indicesTree->SetBranchAddress(kFirstIndex,&temp.m_firstIndex);
  indicesTree->SetBranchAddress(kLastIndex,&temp.m_lastIndex);

  //Need to reorder items since if there was a merge done the same Run
  //and/or Lumi can appear multiple times but we want to process them
  //all at once

  //We use a std::list for m_orderedIndices since inserting into the
  //middle of a std::list does not disrupt the iterators to already
  //existing entries

  //The Map is used to see if a Run/Lumi pair has appeared before
  typedef std::map<RunLumiPHIDKey, std::list<unsigned int>::iterator > RunLumiToLastEntryMap;
  RunLumiToLastEntryMap runLumiToLastEntryMap;

  //Need to group all lumis for the same run together and move the run
  //entry to the beginning
  typedef std::map<RunPHIDKey, std::pair< std::list<unsigned int>::iterator, std::list<unsigned int>::iterator> > RunToFirstLastEntryMap;
  RunToFirstLastEntryMap runToFirstLastEntryMap;

  for (Long64_t index = 0; index != indicesTree->GetEntries(); ++index)
  {
    indicesTree->GetEntry(index);
//     std::cout <<"read r:"<<temp.m_run
//        <<" l:"<<temp.m_lumi
//        <<" b:"<<temp.m_beginTime
//        <<" e:"<<temp.m_endTime
//        <<" fi:" << temp.m_firstIndex
//        <<" li:" << temp.m_lastIndex
//        <<" type:" << temp.m_type << std::endl;
    m_runlumiToRange.push_back(temp);

    RunLumiPHIDKey runLumi(m_reducedHistoryIDs.at(temp.m_historyIDIndex), temp.m_run, temp.m_lumi);
    RunPHIDKey runKey(m_reducedHistoryIDs.at(temp.m_historyIDIndex), temp.m_run);

    RunLumiToLastEntryMap::iterator itFind = runLumiToLastEntryMap.find(runLumi);
    if (itFind == runLumiToLastEntryMap.end())
    {
      //does not already exist
      //does the run for this already exist?
      std::list<unsigned int>::iterator itLastOfRun = m_orderedIndices.end();

      RunToFirstLastEntryMap::iterator itRunFirstLastEntryFind = runToFirstLastEntryMap.find(runKey);
      bool needNewEntryInRunFirstLastEntryMap = true;
      if (itRunFirstLastEntryFind != runToFirstLastEntryMap.end())
      {
        needNewEntryInRunFirstLastEntryMap=false;
        if (temp.m_lumi!=0)
        {
          //lumis go to the end
          itLastOfRun = itRunFirstLastEntryFind->second.second;
          //we want to insert after this one so must advance the iterator
          ++itLastOfRun;
        }
        else
        {
          //runs go at the beginning
          itLastOfRun = itRunFirstLastEntryFind->second.first;
        }
      }
      std::list<unsigned int>::iterator iter = m_orderedIndices.insert(itLastOfRun,index);
      runLumiToLastEntryMap[runLumi]=iter;
      if (needNewEntryInRunFirstLastEntryMap)
        runToFirstLastEntryMap[runKey]=std::make_pair(iter,iter);
      else
      {
        if(temp.m_lumi!=0)
        {
          //lumis go at end
          runToFirstLastEntryMap[runKey].second = iter;
        }
        else
        {
          //since we haven't yet seen this run/lumi combination it means we haven't yet seen
          // a run so we can put this first
          runToFirstLastEntryMap[runKey].first = iter;
        }
      }
    }
    else
    {
      //We need to do a merge since the run/lumi already appeared. Put it after the existing entry
      //std::cout <<" found a second instance of "<<runLumi.first<<" "<<runLumi.second<<" at "<<index<<std::endl;
      std::list<unsigned int>::iterator itNext = itFind->second;
      ++itNext;
      std::list<unsigned int>::iterator iter = m_orderedIndices.insert(itNext,index);
      RunToFirstLastEntryMap::iterator itRunFirstLastEntryFind = runToFirstLastEntryMap.find(runKey);
      if (itRunFirstLastEntryFind->second.second == itFind->second)
      {
        //if the previous one was the last in the run, we need to update to make this one the last
        itRunFirstLastEntryFind->second.second = iter;
      }
      itFind->second = iter;
    }
  }
  m_nextIndexItr = m_orderedIndices.begin();
  m_presentIndexItr = m_orderedIndices.begin();
  
  if(m_nextIndexItr != m_orderedIndices.end()) {
    for( size_t index = 0; index < kNIndicies; ++index) {
      m_trees[index] = dynamic_cast<TTree*>(m_file->Get(kTypeNames[index]));
      assert(0!=m_trees[index]);
      m_treeReaders[index]->setTree(m_trees[index]);
    }
  }
  //After a file open, the framework expects to see a new 'IsRun'
  m_justOpenedFileSoNeedToGenerateRunTransition=true;

  return 1;
}

bool
DQMRootSource::skipIt(edm::RunNumber_t run, edm::LuminosityBlockNumber_t lumi) const {
  if(!m_runsToProcess.empty() && edm::search_all(m_runsToProcess, run) && lumi==0) {
    return false;
  }

  edm::LuminosityBlockID lumiID = edm::LuminosityBlockID(run, lumi);
  edm::LuminosityBlockRange lumiRange = edm::LuminosityBlockRange(lumiID, lumiID);
  bool(*lt)(edm::LuminosityBlockRange const&, edm::LuminosityBlockRange const&) = &edm::lessThan;
  if(!m_lumisToProcess.empty() && !binary_search_all(m_lumisToProcess, lumiRange, lt)) {
    return true;
  }
  return false;
}


void
DQMRootSource::logFileAction(char const* msg, char const* fileName) const {
  edm::LogAbsolute("fileAction") << std::setprecision(0) << edm::TimeOfDay() << msg << fileName;
  edm::FlushMessageLog();
}

//
// const member functions
//

//
// static member functions
//
DEFINE_FWK_INPUT_SOURCE(DQMRootSource);