#include <CrossSectionHandler.h>

Public Member Functions
void	addParameters (std::vector< double > &initpar)
	Inputs the vars in a vector.
	CrossSectionHandler (const std::vector< double > &crossSection, const std::vector< int > &resfind)
unsigned int	parNum ()
std::vector< double >	relativeCrossSections (const double *variables, const std::vector< int > &resfind)
	Perform a variable transformation from N-1 to relative cross sections.
bool	releaseParameters (TMinuit &rmin, const std::vector< int > &resfind, const std::vector< int > &parfix, const int *ind, const int iorder, const unsigned int shift)
	Use the information in resfind, parorder and parfix to release the N-1 variables.
void	setParameters (double Start, double Step, double Mini, double Maxi, int ind, TString parname, const std::vector< double > &parCrossSection, const std::vector< int > &parCrossSectionOrder, const std::vector< int > &resfind)
	Initializes the arrays needed by Minuit.
Protected Member Functions
void	computeRelativeCrossSections (const std::vector< double > &crossSection, const std::vector< int > &resfind)
void	imposeConstraint ()
	Change of variables so that we move from N to N-1 variables using the constraint that Sum(x_i) = 1.
Protected Attributes
unsigned int	numberOfResonances_
unsigned int	parNum_
std::vector< double >	relativeCrossSectionVec_
std::vector< double >	vars_

Detailed Description

Handles the cross sections for MuScleFit.
What counts in the fit is the ratio of the cross sections. However it depends on which resonances are used in the fit. If we are fitting only the Upsilon(1S), for example, we do not need to consider the cross section ratio, because the probability of the other resonances will be 0. This is useful when running on MC to test the algorithm.

The constructor receives the array of cross sections and the array of resfind that tells which of the resonances are considered in the fit.
It builds the relative cross section parameters for each of the resonance and it has a method that unlocks the parameter accordingly.
If for example only the Upsilon(1S) is fitted, the relative cross section will be 1 and it will remain fixed.
The relative cross sections are fitted only when a background fit is done.

Note that this handles only the initialization of the cross sections, so that it is consistent with the fitted resonances, and the fix/release of the cross section parameters.

This assumes that resfind is the same during all the processing (it is saved internally when received in the constructor).

Definition at line 24 of file CrossSectionHandler.h.

Constructor & Destructor Documentation

CrossSectionHandler::CrossSectionHandler	(	const std::vector< double > &	crossSection,
		const std::vector< int > &	resfind
	)		`[inline]`

Definition at line 27 of file CrossSectionHandler.h.

References computeRelativeCrossSections(), imposeConstraint(), parNum_, and vars_.

                                                                                              :
    parNum_(0),
    numberOfResonances_(resfind.size())
  {
    // The number of parameters is the number of fitted resonances minus 1
    std::vector<int>::const_iterator it = resfind.begin();
    for( ; it != resfind.end(); ++it ) {
      if( *it != 0 ) ++parNum_;
    }
    if( parNum_ > 0 ) parNum_ = parNum_ - 1;

    vars_.resize(parNum_);

    computeRelativeCrossSections(crossSection, resfind);
    imposeConstraint();
  }

Member Function Documentation

void CrossSectionHandler::addParameters ( std::vector< double > & initpar ) [inline]

Inputs the vars in a vector.

Definition at line 45 of file CrossSectionHandler.h.

References vars_.

Referenced by MuScleFit::duringFastLoop().

  {
    std::vector<double>::const_iterator it = vars_.begin();
    for( ; it != vars_.end(); ++it ) {
      initpar.push_back(*it);
    }
  }

void CrossSectionHandler::computeRelativeCrossSections	(	const std::vector< double > &	crossSection,
		const std::vector< int > &	resfind
	)		`[inline, protected]`

Initializes the relative cross sections for the range of resonances in [minRes, maxRes]. (note that both minRes and maxRes are included).
Also sets the lock on resonances. If only one of the resonances in the range is fitted its relative cross section will be 1 and it will not be fitted. If there are more than one only those that are fitted will have the relative cross section parameters unlocked during the fit.

Definition at line 160 of file CrossSectionHandler.h.

References ires, and relativeCrossSectionVec_.

Referenced by CrossSectionHandler(), and setParameters().

  {
    relativeCrossSectionVec_.clear();
    double normalization = 0.;
    for( unsigned int ires = 0; ires < resfind.size(); ++ires ) {
      if( resfind[ires] ) {
        normalization += crossSection[ires];
      }
    }
    if( normalization != 0. ) {
      for( unsigned int ires = 0; ires < resfind.size(); ++ires ) {
        if( resfind[ires] ) {
          relativeCrossSectionVec_.push_back(crossSection[ires]/normalization);
        }
      }
    }
  }

void CrossSectionHandler::imposeConstraint ( ) [inline, protected]

Change of variables so that we move from N to N-1 variables using the constraint that Sum(x_i) = 1.

Definition at line 179 of file CrossSectionHandler.h.

References parNum_, relativeCrossSectionVec_, and vars_.

Referenced by CrossSectionHandler(), and setParameters().

  {
    if( parNum_ > 0 ) {
      for( unsigned int iVar = 0; iVar < parNum_; ++iVar ) {
        vars_[iVar] = relativeCrossSectionVec_[iVar+1]/relativeCrossSectionVec_[iVar];
      }
    }
  }

unsigned int CrossSectionHandler::parNum ( ) [inline]

Definition at line 109 of file CrossSectionHandler.h.

References parNum_.

Referenced by MuScleFitUtils::massProb(), and MuScleFitUtils::minimizeLikelihood().

  {
    return parNum_;
  }

std::vector<double> CrossSectionHandler::relativeCrossSections	(	const double *	variables,
		const std::vector< int > &	resfind
	)		`[inline]`

Perform a variable transformation from N-1 to relative cross sections.

Definition at line 115 of file CrossSectionHandler.h.

References i, numberOfResonances_, parNum_, and relativeCrossSectionVec_.

Referenced by MuScleFitUtils::massProb(), and MuScleFitUtils::minimizeLikelihood().

  {
    // parNum_ is 0 in two cases:
    // 1) if only one resonance is being fitted, in which case the relative cross section is
    // fixed to one and there is no need to recompute it
    // 2) if no resonance is being fitted, in which case all the relative cross sections will
    // be set to 0.
    // In both cases there is no need to make the transformation of variables.
    if( parNum_ != 0 ) {
      double * partialProduct = new double[numberOfResonances_];
      double norm = 0.;
      // Loop on all relative cross sections (that are parNum_+1)
      for( unsigned int i=0; i<parNum_+1; ++i ) {
        partialProduct[i] = std::accumulate(variables, variables + i, 1., std::multiplies<double>());
        norm += partialProduct[i];
      }
      for( unsigned int i=0; i<parNum_+1; ++i ) {
        relativeCrossSectionVec_[i] = partialProduct[i]/norm;
      }
      delete[] partialProduct;
    }

    std::vector<double> allRelativeCrossSections;
    std::vector<int>::const_iterator it = resfind.begin();
    int smallerVectorIndex = 0;
    for( ; it != resfind.end(); ++it ) {
      if( *it == 0 ) {
        allRelativeCrossSections.push_back(0.);
      }
      else {
        allRelativeCrossSections.push_back(relativeCrossSectionVec_[smallerVectorIndex]);
        ++smallerVectorIndex;
      }
    }

    return allRelativeCrossSections;
  }

bool CrossSectionHandler::releaseParameters	(	TMinuit &	rmin,
		const std::vector< int > &	resfind,
		const std::vector< int > &	parfix,
		const int *	ind,
		const int	iorder,
		const unsigned int	shift
	)		`[inline]`

Use the information in resfind, parorder and parfix to release the N-1 variables.

Definition at line 88 of file CrossSectionHandler.h.

References i, and numberOfResonances_.

Referenced by MuScleFitUtils::minimizeLikelihood().

  {
    // Find the number of free cross section parameters in this iteration
    unsigned int freeParNum = 0;
    for( unsigned int ipar=0; ipar<numberOfResonances_; ++ipar ) {
      if( (parfix[shift+ipar]==0) && (ind[shift+ipar]<=iorder) && (resfind[ipar] == 1) ) {
        ++freeParNum;
      }
    }
    if( freeParNum > 0 ) {
      freeParNum = freeParNum - 1;
      // Free only the first (freeParNum-1) of the N-1 variables
      for( unsigned int i=0; i<freeParNum; ++i ) {
        rmin.Release( shift+i );
      }
      return true;
    }
    return false;
  }

void CrossSectionHandler::setParameters	(	double *	Start,
		double *	Step,
		double *	Mini,
		double *	Maxi,
		int *	ind,
		TString *	parname,
		const std::vector< double > &	parCrossSection,
		const std::vector< int > &	parCrossSectionOrder,
		const std::vector< int > &	resfind
	)		`[inline]`

Initializes the arrays needed by Minuit.

Definition at line 54 of file CrossSectionHandler.h.

References computeRelativeCrossSections(), imposeConstraint(), numberOfResonances_, parNum_, and vars_.

Referenced by MuScleFitUtils::minimizeLikelihood().

  {
    computeRelativeCrossSections(parCrossSection, resfind);
    imposeConstraint();

    double thisStep[] = {0.001, 0.001, 0.001, 0.001, 0.001};
    TString thisParName[] = {"cross section var 1",
                             "cross section var 2",
                             "cross section var 3",
                             "cross section var 4",
                             "cross section var 5"};
    double thisMini[] = {0., 0., 0., 0., 0.};
    double thisMaxi[] = {1000., 1000., 1000., 1000., 1000.};

    // This is used to unlock the parameters in a given order. It is not
    // a TMinuit parameter, but a MuScleFit parameter.
    for( unsigned int iPar=0; iPar<numberOfResonances_; ++iPar ) {
      ind[iPar] = parCrossSectionOrder[iPar];
    }

    if( parNum_ > 0 ) {
      for( unsigned int iPar=0; iPar<parNum_; ++iPar ) {
        Start[iPar] = vars_[iPar];
        Step[iPar] = thisStep[iPar];
        Mini[iPar] = thisMini[iPar];
        Maxi[iPar] = thisMaxi[iPar];
        parname[iPar] = thisParName[iPar];
      }
    }
  }