#include <AlignmentIO.h>

Inheritance diagram for AlignmentIO:

Public Member Functions
virtual AlignablePositions	readAlignableAbsolutePositions (const align::Alignables &alivec, const char *filename, int iter, int &ierr)=0
	read Alignable current absolute positions More...

virtual AlignablePositions	readAlignableOriginalPositions (const align::Alignables &alivec, const char *filename, int iter, int &ierr)=0
	read Alignable original (before misalignment) absolute positions More...

virtual AlignableShifts	readAlignableRelativePositions (const align::Alignables &alivec, const char *filename, int iter, int &ierr)=0
	read Alignable relative positions (shift,rotation) More...

virtual align::Parameters	readAlignmentParameters (const align::Alignables &alivec, const char *filename, int iter, int &ierr)=0
	read AlignmentParameters More...

virtual align::Correlations	readCorrelations (const align::Alignables &alivec, const char *filename, int iter, int &ierr)=0
	read Correlations More...

virtual void	writeAlignableAbsolutePositions (const align::Alignables &alivec, const char *filename, int iter, bool validCheck, int &ierr)=0
	write Alignable current absolute positions More...

virtual void	writeAlignableOriginalPositions (const align::Alignables &alivec, const char *filename, int iter, bool validCheck, int &ierr)=0
	write Alignable original (before misalignment) absolute positions More...

virtual void	writeAlignableRelativePositions (const align::Alignables &alivec, const char *filename, int iter, bool validCheck, int &ierr)=0
	write Alignable relative positions (shift,rotation) More...

virtual void	writeAlignmentParameters (const align::Alignables &alivec, const char *filename, int iter, bool validCheck, int &ierr)=0
	write AlignmentParameters More...

virtual void	writeCorrelations (const align::Correlations &cormap, const char *filename, int iter, bool validCheck, int &ierr)=0
	write Correlations More...

virtual void	writeOrigRigidBodyAlignmentParameters (const align::Alignables &alivec, const char *filename, int iter, bool validCheck, int &ierr)=0
	write RigidBodyAlignmentParameters as applied on top of original positions More...

Detailed Description

Abstract base class for input/output of Alignment parameters, Correlations, as well as absolute and relative coordinates of Alignables

Date:: 2007/10/08 14:38:15

Revision:: 1.4

(last update by

Author:: cklae

)

Definition at line 19 of file AlignmentIO.h.

Member Function Documentation

virtual AlignablePositions AlignmentIO::readAlignableAbsolutePositions	(	const align::Alignables &	alivec,
		const char *	filename,
		int	iter,
		int &	ierr
	)

pure virtual

read Alignable current absolute positions

Implemented in AlignmentIORoot.

virtual AlignablePositions AlignmentIO::readAlignableOriginalPositions	(	const align::Alignables &	alivec,
		const char *	filename,
		int	iter,
		int &	ierr
	)

pure virtual

read Alignable original (before misalignment) absolute positions

Implemented in AlignmentIORoot.

virtual AlignableShifts AlignmentIO::readAlignableRelativePositions	(	const align::Alignables &	alivec,
		const char *	filename,
		int	iter,
		int &	ierr
	)

pure virtual

read Alignable relative positions (shift,rotation)

Implemented in AlignmentIORoot.

virtual align::Parameters AlignmentIO::readAlignmentParameters	(	const align::Alignables &	alivec,
		const char *	filename,
		int	iter,
		int &	ierr
	)

pure virtual

read AlignmentParameters

Implemented in AlignmentIORoot.

virtual align::Correlations AlignmentIO::readCorrelations	(	const align::Alignables &	alivec,
		const char *	filename,
		int	iter,
		int &	ierr
	)

pure virtual

read Correlations

Implemented in AlignmentIORoot.

virtual void AlignmentIO::writeAlignableAbsolutePositions	(	const align::Alignables &	alivec,
		const char *	filename,
		int	iter,
		bool	validCheck,
		int &	ierr
	)

pure virtual

write Alignable current absolute positions

Implemented in AlignmentIORoot.

virtual void AlignmentIO::writeAlignableOriginalPositions	(	const align::Alignables &	alivec,
		const char *	filename,
		int	iter,
		bool	validCheck,
		int &	ierr
	)

pure virtual

write Alignable original (before misalignment) absolute positions

Implemented in AlignmentIORoot.

virtual void AlignmentIO::writeAlignableRelativePositions	(	const align::Alignables &	alivec,
		const char *	filename,
		int	iter,
		bool	validCheck,
		int &	ierr
	)

pure virtual

write Alignable relative positions (shift,rotation)

Implemented in AlignmentIORoot.

virtual void AlignmentIO::writeAlignmentParameters	(	const align::Alignables &	alivec,
		const char *	filename,
		int	iter,
		bool	validCheck,
		int &	ierr
	)

pure virtual

write AlignmentParameters

Implemented in AlignmentIORoot.

virtual void AlignmentIO::writeCorrelations	(	const align::Correlations &	cormap,
		const char *	filename,
		int	iter,
		bool	validCheck,
		int &	ierr
	)

pure virtual

write Correlations

Implemented in AlignmentIORoot.

virtual void AlignmentIO::writeOrigRigidBodyAlignmentParameters	(	const align::Alignables &	alivec,
		const char *	filename,
		int	iter,
		bool	validCheck,
		int &	ierr
	)

pure virtual

write RigidBodyAlignmentParameters as applied on top of original positions

Implemented in AlignmentIORoot.

Public Member Functions

Detailed Description

Member Function Documentation