KFFittingSmoother.cc

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#include "TrackingTools/TrackFitters/interface/KFFittingSmoother.h"
// #include "TrackingTools/MaterialEffects/interface/PropagatorWithMaterial.h"
#include "TrackingTools/KalmanUpdators/interface/KFUpdator.h"
#include "TrackingTools/TrackFitters/interface/KFTrajectoryFitter.h"
#include "TrackingTools/TrackFitters/interface/KFTrajectorySmoother.h"
#include "TrackingTools/GeomPropagators/interface/AnalyticalPropagator.h"
#include "FWCore/MessageLogger/interface/MessageLogger.h"
#include "TrackingTools/TransientTrackingRecHit/interface/InvalidTransientRecHit.h"

// ggiurgiu@fnal.gov: Add headers needed to cut on pixel hit probability
#include "DataFormats/TrackerRecHit2D/interface/SiPixelRecHit.h"
#include "DataFormats/SiPixelDetId/interface/PXBDetId.h"
#include "DataFormats/SiPixelDetId/interface/PXFDetId.h"

using namespace std;

KFFittingSmoother::~KFFittingSmoother() 
{
  delete theSmoother;
  delete theFitter;
}

vector<Trajectory> KFFittingSmoother::fit(const Trajectory& t) const 
{
  vector<Trajectory> smoothed;
  if ( t.isValid() ) 
    { 
      vector<Trajectory> fitted = fitter()->fit(t);
      smoothingStep(fitted, smoothed);
    }
  return smoothed;
}

vector<Trajectory> KFFittingSmoother::fit(const TrajectorySeed& aSeed,
                      const RecHitContainer& hits, 
                      const TrajectoryStateOnSurface& firstPredTsos) const 
{
  LogDebug("TrackFitters") << "In KFFittingSmoother::fit";

  //if(hits.empty()) return vector<Trajectory>(); // gio: moved later to optimize return value
  
  bool hasoutliers;
  bool has_low_pixel_prob; // ggiurgiu@fnal.gov: Add flag for pixel hits with low template probability

  // ggiurgiu@fnal.gov: If log(Prob) < -15.0 or if Prob <= 0.0 then set log(Prob) = -15.0
  double log_pixel_probability_lower_limit = -15.0;

  RecHitContainer myHits = hits; 
  vector<Trajectory> smoothed;
  vector<Trajectory> tmp_first;

  do
    {
      if ( hits.empty() ) 
    { 
      smoothed.clear(); 
      break; 
    }
      
      //if no outliers the fit is done only once
      //for (unsigned int j=0;j<myHits.size();j++) { 
      //if (myHits[j]->det()) 
      //LogTrace("TrackFitters") << "hit #:" << j+1 << " rawId=" << myHits[j]->det()->geographicalId().rawId() 
      //<< " validity=" << myHits[j]->isValid();
      //else
      //LogTrace("TrackFitters") << "hit #:" << j+1 << " Hit with no Det information";
      //}
      
      hasoutliers        = false;
      has_low_pixel_prob = false; // ggiurgiu@fnal.gov
      
      double cut = theEstimateCut;
      
      double log_pixel_prob_cut = theLogPixelProbabilityCut;  // ggiurgiu@fnal.gov
      
      
      unsigned int outlierId = 0;
      const GeomDet* outlierDet = 0;
      
      unsigned int low_pixel_prob_Id = 0; // ggiurgiu@fnal.gov
      const GeomDet* low_pixel_prob_Det = 0; // ggiurgiu@fnal.gov
      
      //call the fitter
      vector<Trajectory> fitted = fitter()->fit(aSeed, myHits, firstPredTsos);
      //call the smoother
      smoothed.clear();
      smoothingStep(fitted, smoothed);
      
      //if (tmp_first.size()==0) tmp_first = smoothed; moved later
      
      if ( smoothed.empty() ) 
    {
      if ( rejectTracksFlag )
        {
          LogTrace("TrackFitters") << "smoothed.size()==0 => trajectory rejected";
          //return vector<Trajectory>(); // break is enough to get this
        } 
      else 
        {
          LogTrace("TrackFitters") << "smoothed.size()==0 => returning orignal trajectory" ;
          smoothed.swap(tmp_first); // if first attempt, tmp_first would be empty anyway
        }
      break;
    } 
      //else {
      //LogTrace("TrackFitters") << "dump hits after smoothing";
      //Trajectory::DataContainer meas = smoothed[0].measurements();
      //for (Trajectory::DataContainer::iterator it=meas.begin();it!=meas.end();++it) {
      //LogTrace("TrackFitters") << "hit #" << meas.end()-it-1 << " validity=" << it->recHit()->isValid() 
      //<< " det=" << it->recHit()->geographicalId().rawId();
      //}
      //}
      
      if ( theEstimateCut > 0 || log_pixel_prob_cut > log_pixel_probability_lower_limit ) 
    {
      if ( smoothed[0].foundHits() < theMinNumberOfHits ) 
        {
          if ( rejectTracksFlag ) 
        {
          LogTrace("TrackFitters") << "smoothed[0].foundHits()<theMinNumberOfHits => trajectory rejected";
          smoothed.clear();
          //return vector<Trajectory>(); // break is enough
        } 
          else 
        {
          // it might be it's the first step
          if ( !tmp_first.empty() ) 
            { 
              tmp_first.swap(smoothed); 
            } 
          
          LogTrace("TrackFitters") 
            << "smoothed[0].foundHits()<theMinNumberOfHits => returning orignal trajectory with chi2=" 
            <<  smoothed[0].chiSquared() ;
        }
          break;
        }
      
      // Check if there are outliers or low probability pixel rec hits
      const std::vector<TrajectoryMeasurement> & vtm = smoothed[0].measurements();
      
      double log_pixel_hit_probability = -999999.9;
      
      for (std::vector<TrajectoryMeasurement>::const_iterator tm=vtm.begin(); tm!=vtm.end();tm++)
        {
          double estimate = tm->estimate();
          
          // --- here is the block of code about generic chi2-based Outlier Rejection ---
          if ( estimate > cut ) 
        {
          hasoutliers = true;
          cut = estimate;
          outlierId  = tm->recHit()->geographicalId().rawId();
          outlierDet = tm->recHit()->det();
        }
          // --- here the block of code about generic chi2-based Outlier Rejection ends ---


          // --- here is the block of code about PXL Outlier Rejection ---
          if(log_pixel_prob_cut > log_pixel_probability_lower_limit){ 
        // TO BE FIXED: the following code should really be moved into an external class or 
        // at least in a separate function. Current solution is ugly!
        // The KFFittingSmoother shouldn't handle the details of 
        // Outliers identification and rejection. It shoudl just fit tracks.

        // ggiurgiu@fnal.gov: Get pixel hit probability here 
        TransientTrackingRecHit::ConstRecHitPointer hit = tm->recHit();
        unsigned int testSubDetID = ( hit->geographicalId().subdetId() );
        
        if ( hit->isValid() && 
             hit->geographicalId().det() == DetId::Tracker && 
             ( testSubDetID == PixelSubdetector::PixelBarrel || 
               testSubDetID == PixelSubdetector::PixelEndcap )
             )
          {
            // get the enclosed persistent hit
            const TrackingRecHit* persistentHit = hit->hit();
            
            // check if it's not null, and if it's a valid pixel hit
            if ( !persistentHit == 0 && 
             typeid(*persistentHit) == typeid(SiPixelRecHit) ) 
              {
            
            // tell the C++ compiler that the hit is a pixel hit
            const SiPixelRecHit* pixhit = dynamic_cast<const SiPixelRecHit*>( hit->hit() );
            
            double pixel_hit_probability = (float)pixhit->clusterProbability(0);
                
            if ( pixel_hit_probability < 0.0 )
              LogDebug("From KFFittingSmoother.cc") 
                << "Wraning : Negative pixel hit probability !!!! Will set the probability to 10^{-15} !!!" << endl;
            
            if ( pixel_hit_probability <= 0.0 || log10( pixel_hit_probability ) < log_pixel_probability_lower_limit )  
              log_pixel_hit_probability = log_pixel_probability_lower_limit; 
            else 
              log_pixel_hit_probability = log10( pixel_hit_probability );
            
            if ( log_pixel_hit_probability < log_pixel_prob_cut )
              {
                has_low_pixel_prob = true;
                log_pixel_prob_cut = log_pixel_hit_probability;
                low_pixel_prob_Id  = tm->recHit()->geographicalId().rawId();
                low_pixel_prob_Det = tm->recHit()->det();
              }     
            
              } // if ( !persistentHit == 0 && ... )
          
          } // if ( hit->isValid() && ... )
          }       
          // --- here the block of code about PXL Outlier Rejection ends --- 
          

        } // for (std::vector<TrajectoryMeasurement>::const_iterator tm=vtm.begin(); tm!=vtm.end(); tm++)
      
      
      if ( hasoutliers || has_low_pixel_prob ) 
        { // Reject outliers and pixel hits with low probability 
          
          // Replace outlier hit or low probability pixel hit with invalid hit
          for ( unsigned int j=0; j<myHits.size(); ++j ) 
        { 
          if ( hasoutliers && outlierId == myHits[j]->geographicalId().rawId() )
            {
              LogTrace("TrackFitters") << "Rejecting outlier hit  with estimate " << cut << " at position " 
                           << j << " with rawId=" << myHits[j]->geographicalId().rawId();
              LogTrace("TrackFitters") << "The fit will be repeated without the outlier";
              myHits[j] = InvalidTransientRecHit::build(outlierDet, TrackingRecHit::missing);
            }
          else if ( has_low_pixel_prob && low_pixel_prob_Id == myHits[j]->geographicalId().rawId() )
            {
              LogTrace("TrackFitters") << "Rejecting low proability pixel hit with log_pixel_prob_cut = " 
                           << log_pixel_prob_cut << " at position " 
                           << j << " with rawId =" << myHits[j]->geographicalId().rawId();
              LogTrace("TrackFitters") << "The fit will be repeated without the outlier";
              myHits[j] = InvalidTransientRecHit::build(low_pixel_prob_Det, TrackingRecHit::missing);
            }
          
        } // for ( unsigned int j=0; j<myHits.size(); ++j)
          
          // Look if there are two consecutive invalid hits
          if ( breakTrajWith2ConsecutiveMissing ) 
        {
          unsigned int firstinvalid = myHits.size()-1;
          for ( unsigned int j=0; j<myHits.size()-1; ++j ) 
            { 
              if ( ((myHits[j  ]->type() == TrackingRecHit::missing) && (myHits[j  ]->geographicalId().rawId() != 0)) && 
               ((myHits[j+1]->type() == TrackingRecHit::missing) && (myHits[j+1]->geographicalId().rawId() != 0)) ) 
            {
              firstinvalid = j;
              LogTrace("TrackFitters") << "Found two consecutive missing hits. First invalid: " << firstinvalid;
              break;
            }
            }
          
          //reject all the hits after the last valid before two consecutive invalid (missing) hits
          //hits are sorted in the same order as in the track candidate FIXME??????
          myHits.erase(myHits.begin()+firstinvalid,myHits.end());
          
        }
          
        } // if ( hasoutliers || has_low_pixel_prob ) 
      
    } // if ( theEstimateCut > 0 ... )
  
      if ( ( hasoutliers ||        // otherwise there won't be a 'next' loop where tmp_first could be useful 
         has_low_pixel_prob ) &&  // ggiurgiu@fnal.gov
       !rejectTracksFlag &&  // othewrise we won't ever need tmp_first
       tmp_first.empty() ) 
    { // only at first step
      smoothed.swap(tmp_first);
    }   
      
    } // do
  while ( hasoutliers || has_low_pixel_prob ); // ggiurgiu@fnal.gov
  
  if ( !smoothed.empty() ) 
    {
      if ( noInvalidHitsBeginEnd ) 
    {
      // discard latest dummy measurements
      if ( !smoothed[0].empty() && 
           !smoothed[0].lastMeasurement().recHit()->isValid() ) 
        LogTrace("TrackFitters") << "Last measurement is invalid";
    
      while ( !smoothed[0].empty() && 
          !smoothed[0].lastMeasurement().recHit()->isValid() ) 
        smoothed[0].pop();
      
      //remove the invalid hits at the begin of the trajectory
      if ( !smoothed[0].firstMeasurement().recHit()->isValid() ) 
        {
          LogTrace("TrackFitters") << "First measurement is invalid";
          Trajectory tmpTraj(smoothed[0].seed(),smoothed[0].direction());
          Trajectory::DataContainer meas = smoothed[0].measurements();
          
          Trajectory::DataContainer::iterator it;//first valid hit
          for ( it=meas.begin(); it!=meas.end(); ++it ) 
        {
          if ( !it->recHit()->isValid() ) 
            continue;
          else break;
        }
          tmpTraj.push(*it,smoothed[0].chiSquared());//push the first valid measurement and set the same global chi2
         
          for (Trajectory::DataContainer::iterator itt=it+1; itt!=meas.end();++itt) 
        {
          tmpTraj.push(*itt,0);//add all the other measurements
        }
          
          smoothed.clear();
          smoothed.push_back(tmpTraj);
       
        } //  if ( !smoothed[0].firstMeasurement().recHit()->isValid() ) 
    
    } // if ( noInvalidHitsBeginEnd ) 
      
      LogTrace("TrackFitters") << "end: returning smoothed trajectory with chi2=" 
                   << smoothed[0].chiSquared() ;
      
      //LogTrace("TrackFitters") << "dump hits before return";
      //Trajectory::DataContainer meas = smoothed[0].measurements();
      //for (Trajectory::DataContainer::iterator it=meas.begin();it!=meas.end();++it) {
      //LogTrace("TrackFitters") << "hit #" << meas.end()-it-1 << " validity=" << it->recHit()->isValid() 
      //<< " det=" << it->recHit()->geographicalId().rawId();
      //}
      
    }

  return smoothed;

}


void 
KFFittingSmoother::smoothingStep(vector<Trajectory>& fitted, vector<Trajectory> &smoothed) const
{
 
  for(vector<Trajectory>::iterator it = fitted.begin(); it != fitted.end();
      it++) {
    vector<Trajectory> mysmoothed = smoother()->trajectories(*it);
    smoothed.insert(smoothed.end(), mysmoothed.begin(), mysmoothed.end());
  }
  LogDebug("TrackFitters") << "In KFFittingSmoother::smoothingStep "<<smoothed.size();
}

vector<Trajectory> KFFittingSmoother::fit(const TrajectorySeed& aSeed,
                      const RecHitContainer& hits) const{

  throw cms::Exception("TrackFitters", 
               "KFFittingSmoother::fit(TrajectorySeed, <TransientTrackingRecHit>) not implemented"); 

  return vector<Trajectory>();
}