Public Member Functions | |
def | __init__ |
def | appendToExtendedValidation |
def | createConfiguration |
def | createScript |
def | getRepMap |
Public Member Functions inherited from validateAlignments.GenericValidation | |
def | __init__ |
def | createConfiguration |
def | createFiles |
def | createScript |
def | getCompareStrings |
def | getRepMap |
Private Attributes | |
__DMRMethod | |
__DMRMinimum | |
__OfflineTreeBaseDir | |
Additional Inherited Members | |
Public Attributes inherited from validateAlignments.GenericValidation | |
alignmentToValidate | |
configFiles | |
filesToCompare | |
randomWorkdirPart | |
scriptFiles | |
Static Public Attributes inherited from validateAlignments.GenericValidation | |
string | defaultReferenceName = "DEFAULT" |
Definition at line 371 of file validateAlignments.py.
def validateAlignments.OfflineValidation.__init__ | ( | self, | |
alignment, | |||
config | |||
) |
Definition at line 372 of file validateAlignments.py.
References validateAlignments.readGeneral().
def validateAlignments.OfflineValidation.appendToExtendedValidation | ( | self, | |
validationsSoFar = "" |
|||
) |
if no argument or "" is passed a string with an instantiation is returned, else the validation is appended to the list
Definition at line 420 of file validateAlignments.py.
References validateAlignments.Alignment.getRepMap(), and validateAlignments.GenericValidation.getRepMap().
def validateAlignments.OfflineValidation.createConfiguration | ( | self, | |
path, | |||
configBaseName = "TkAlOfflineValidation" |
|||
) |
Definition at line 379 of file validateAlignments.py.
References validateAlignments.GenericValidation.filesToCompare, validateAlignments.Alignment.getRepMap(), validateAlignments.GenericValidation.getRepMap(), and validateAlignments.replaceByMap().
def validateAlignments.OfflineValidation.createScript | ( | self, | |
path, | |||
scriptBaseName = "TkAlOfflineValidation" |
|||
) |
Definition at line 387 of file validateAlignments.py.
References validateAlignments.GenericValidation.configFiles, and validateAlignments.replaceByMap().
def validateAlignments.OfflineValidation.getRepMap | ( | self, | |
alignment = None |
|||
) |
Definition at line 398 of file validateAlignments.py.
References validateAlignments.OfflineValidation.__DMRMethod, validateAlignments.OfflineValidation.__DMRMinimum, validateAlignments.OfflineValidation.__OfflineTreeBaseDir, and validateAlignments.replaceByMap().
|
private |
Definition at line 375 of file validateAlignments.py.
Referenced by validateAlignments.OfflineValidation.getRepMap().
|
private |
Definition at line 376 of file validateAlignments.py.
Referenced by validateAlignments.OfflineValidation.getRepMap().
|
private |
Definition at line 377 of file validateAlignments.py.
Referenced by validateAlignments.OfflineValidation.getRepMap().