autoNANO Namespace Reference

Functions
def	expandNanoMapping (seqList, mapping, key)

Variables
	autoNANO

Function Documentation

expandNanoMapping()

def autoNANO.expandNanoMapping	(		seqList,
			mapping,
			key
	)

Definition at line 1 of file autoNANO.py.

References submitPVValidationJobs.split().

Referenced by ConfigBuilder.ConfigBuilder.prepare_NANO().

def expandNanoMapping(seqList, mapping, key):
    maxLevel=30
    level=0
    while '@' in repr(seqList) and level<maxLevel:
        level+=1
        for specifiedCommand in seqList:
            if specifiedCommand.startswith('@'):
                location=specifiedCommand[1:]
                if not location in mapping:
                    raise Exception("Impossible to map "+location+" from "+repr(mapping))
                mappedTo=mapping[location]
                # no mapping for specified key
                # NOTE: mising key of key=None is interpreted differently than empty string:
                #  - An empty string recalls the default for the given key
                #  - None is interpreted as "ignore this"
                insertAt=seqList.index(specifiedCommand)
                seqList.remove(specifiedCommand)
                if key in mappedTo and mappedTo[key] is not None:
                    allToInsert=mappedTo[key].split('+')
                    for offset,toInsert in enumerate(allToInsert):
                        seqList.insert(insertAt+offset,toInsert)
                break;
        if level==maxLevel:
            raise Exception("Could not fully expand "+repr(seqList)+" from "+repr(mapping))

Variable Documentation

autoNANO

autoNANO.autoNANO

Definition at line 27 of file autoNANO.py.