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MatrixReader.py
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1 from __future__ import print_function
2 import sys, os
3 
4 from Configuration.PyReleaseValidation.WorkFlow import WorkFlow
5 from Configuration.PyReleaseValidation.MatrixUtil import InputInfo
6 
7 # ================================================================================
8 
10  def __init__(self, msg):
11  self.msg = msg
12  def __str__(self):
13  return self.msg
14 
15 # ================================================================================
16 
18 
19  def __init__(self, opt):
20 
21  self.reset(opt.what)
22 
23  self.wm=opt.wmcontrol
24  self.revertDqmio=opt.revertDqmio
25  self.addCommand=opt.command
26  self.apply=opt.apply
27  self.commandLineWf=opt.workflow
28  self.overWrite=opt.overWrite
29 
30  self.noRun = opt.noRun
31  return
32 
33  def reset(self, what='all'):
34 
35  self.what = what
36 
37  #a bunch of information, but not yet the WorkFlow object
38  self.workFlowSteps = {}
39  #the actual WorkFlow objects
40  self.workFlows = []
41  self.nameList = {}
42 
43  self.filesPrefMap = {'relval_standard' : 'std-' ,
44  'relval_highstats': 'hi-' ,
45  'relval_pileup': 'PU-' ,
46  'relval_generator': 'gen-',
47  'relval_extendedgen': 'genExt-',
48  'relval_production': 'prod-' ,
49  'relval_ged': 'ged-',
50  'relval_upgrade':'upg-',
51  'relval_cleanedupgrade':'clnupg-',
52  'relval_gpu':'gpu-',
53  'relval_2017':'2017-',
54  'relval_2026':'2026-',
55  'relval_identity':'id-',
56  'relval_machine': 'mach-',
57  'relval_premix': 'premix-',
58  'relval_nano':'nano-'
59  }
60 
61  self.files = ['relval_standard' ,
62  'relval_highstats',
63  'relval_pileup',
64  'relval_generator',
65  'relval_extendedgen',
66  'relval_production',
67  'relval_ged',
68  'relval_upgrade',
69  'relval_cleanedupgrade',
70  'relval_gpu',
71  'relval_2017',
72  'relval_2026',
73  'relval_identity',
74  'relval_machine',
75  'relval_premix',
76  'relval_nano'
77  ]
78  self.filesDefault = {'relval_standard':True ,
79  'relval_highstats':True ,
80  'relval_pileup':True,
81  'relval_generator':True,
82  'relval_extendedgen':True,
83  'relval_production':True,
84  'relval_ged':True,
85  'relval_upgrade':False,
86  'relval_cleanedupgrade':False,
87  'relval_gpu':False,
88  'relval_2017':True,
89  'relval_2026':True,
90  'relval_identity':False,
91  'relval_machine':True,
92  'relval_premix':True,
93  'relval_nano':True
94  }
95 
96  self.relvalModule = None
97 
98  return
99 
100  def makeCmd(self, step):
101 
102  cmd = ''
103  cfg = None
104  input = None
105  for k,v in step.items():
106  if 'no_exec' in k : continue # we want to really run it ...
107  if k.lower() == 'cfg':
108  cfg = v
109  continue # do not append to cmd, return separately
110  if k.lower() == 'input':
111  input = v
112  continue # do not append to cmd, return separately
113 
114  #chain the configs
115  #if k.lower() == '--python':
116  # v = 'step%d_%s'%(index,v)
117  cmd += ' ' + k + ' ' + str(v)
118  return cfg, input, cmd
119 
120  def makeStep(self,step,overrides):
122  if len(overrides) > 0:
123  copyStep=merge([overrides]+[step])
124  return copyStep
125  else:
126  return step
127 
128  def readMatrix(self, fileNameIn, useInput=None, refRel=None, fromScratch=None):
129 
130  prefix = self.filesPrefMap[fileNameIn]
131 
132  print("processing", fileNameIn)
133 
134  try:
135  _tmpMod = __import__( 'Configuration.PyReleaseValidation.'+fileNameIn )
136  self.relvalModule = sys.modules['Configuration.PyReleaseValidation.'+fileNameIn]
137  except Exception as e:
138  print("ERROR importing file ", fileNameIn, str(e))
139  return
140 
141  if useInput is not None:
142  print("request for INPUT for ", useInput)
143 
144 
145  fromInput={}
146 
147  if useInput:
148  for i in useInput:
149  if ':' in i:
150  (ik,il)=i.split(':')
151  if ik=='all':
152  for k in self.relvalModule.workflows.keys():
153  fromInput[float(k)]=int(il)
154  else:
155  fromInput[float(ik)]=int(il)
156  else:
157  if i=='all':
158  for k in self.relvalModule.workflows.keys():
159  fromInput[float(k)]=0
160  else:
161  fromInput[float(i)]=0
162 
163  if fromScratch:
164  fromScratch=map(float,fromScratch)
165  for num in fromScratch:
166  if num in fromInput:
167  fromInput.pop(num)
168  #overwrite steps
169  if self.overWrite:
170  for p in self.overWrite:
171  self.relvalModule.steps.overwrite(p)
172 
173  #change the origin of dataset on the fly
174  if refRel:
175  if ',' in refRel:
176  refRels=refRel.split(',')
177  if len(refRels)!=len(self.relvalModule.baseDataSetRelease):
178  return
180  self.relvalModule.steps,
181  list(zip(self.relvalModule.baseDataSetRelease,refRels))
182  )
183  else:
185  self.relvalModule.steps,
186  [(x,refRel) for x in self.relvalModule.baseDataSetRelease]
187  )
188 
189  for num, wfInfo in self.relvalModule.workflows.items():
190  commands=[]
191  wfName = wfInfo[0]
192  stepList = wfInfo[1]
193  stepOverrides=wfInfo.overrides
194  # upgrade case: workflow has basic name, key[, suffix (only special workflows)]
195  wfKey = ""
196  wfSuffix = ""
197  if isinstance(wfName, list) and len(wfName)>1:
198  if len(wfName)>2: wfSuffix = wfName[2]
199  wfKey = wfName[1]
200  wfName = wfName[0]
201  # if no explicit name given for the workflow, use the name of step1
202  if wfName.strip() == '': wfName = stepList[0]
203  # option to specialize the wf as the third item in the WF list
204  addTo=None
205  addCom=None
206  if len(wfInfo)>=3:
207  addCom=wfInfo[2]
208  if not isinstance(addCom, list): addCom=[addCom]
209  #print 'added dict',addCom
210  if len(wfInfo)>=4:
211  addTo=wfInfo[3]
212  #pad with 0
213  while len(addTo)!=len(stepList):
214  addTo.append(0)
215 
216  name=wfName
217  # separate suffixes by + because show() excludes first part of name
218  if len(wfKey)>0:
219  name = name+'+'+wfKey
220  if len(wfSuffix)>0: name = name+wfSuffix
221  stepIndex=0
222  ranStepList=[]
223  name_for_workflow = name
224 
225  #first resolve INPUT possibilities
226  if num in fromInput:
227  ilevel=fromInput[num]
228  #print num,ilevel
229  for (stepIr,step) in enumerate(reversed(stepList)):
230  stepName=step
231  stepI=(len(stepList)-stepIr)-1
232  #print stepIr,step,stepI,ilevel
233  if stepI>ilevel:
234  #print "ignoring"
235  continue
236  if stepI!=0:
237  testName='__'.join(stepList[0:stepI+1])+'INPUT'
238  else:
239  testName=step+'INPUT'
240  #print "JR",stepI,stepIr,testName,stepList
241  if testName in self.relvalModule.steps:
242  #print "JR",stepI,stepIr
243  stepList[stepI]=testName
244  #pop the rest in the list
245  #print "\tmod prepop",stepList
246  for p in range(stepI):
247  stepList.pop(0)
248  #print "\t\tmod",stepList
249  break
250 
251  for (stepI,step) in enumerate(stepList):
252  stepName=step
253  if self.relvalModule.steps[stepName] is None:
254  continue
255  if self.wm:
256  #cannot put a certain number of things in wm
257  if stepName in ['SKIMD','SKIMCOSD','SKIMDreHLT']:
258  continue
259 
260  #replace stepName is needed
261  #if stepName in self.replaceStep
262  if len(name) > 0 : name += '+'
263  #any step can be mirrored with INPUT
264 
265  """
266  if num in fromInput:
267  if step+'INPUT' in self.relvalModule.steps.keys():
268  stepName = step+"INPUT"
269  stepList.remove(step)
270  stepList.insert(stepIndex,stepName)
271  """
272  stepNameTmp = stepName
273  if len(wfKey)>0: stepNameTmp = stepNameTmp.replace('_'+wfKey,"")
274  if len(wfSuffix)>0: stepNameTmp = stepNameTmp.replace(wfSuffix,"")
275  name += stepNameTmp
276  if addCom and (not addTo or addTo[stepIndex]==1):
278  copyStep=merge(addCom+[self.makeStep(self.relvalModule.steps[stepName],stepOverrides)])
279  cfg, input, opts = self.makeCmd(copyStep)
280  else:
281  cfg, input, opts = self.makeCmd(self.makeStep(self.relvalModule.steps[stepName],stepOverrides))
282 
283  if input and cfg :
284  msg = "FATAL ERROR: found both cfg and input for workflow "+str(num)+' step '+stepName
285  raise MatrixException(msg)
286 
287  if input:
288  cmd = input
289  if self.noRun:
290  cmd.run=[]
291  else:
292  if cfg:
293  cmd = 'cmsDriver.py '+cfg+' '+opts
294  else:
295  cmd = 'cmsDriver.py step'+str(stepIndex+1)+' '+opts
296  if self.wm:
297  cmd+=' --io %s.io --python %s.py'%(stepName,stepName)
298  if self.addCommand:
299  if self.apply:
300  if stepIndex in self.apply or stepName in self.apply:
301  cmd +=' '+self.addCommand
302  else:
303  cmd +=' '+self.addCommand
304  if self.wm and self.revertDqmio=='yes':
305  cmd=cmd.replace('DQMIO','DQM')
306  cmd=cmd.replace('--filetype DQM','')
307  commands.append(cmd)
308  ranStepList.append(stepName)
309  stepIndex+=1
310  self.workFlowSteps[(num,prefix)] = (num, name_for_workflow, commands, ranStepList)
311 
312  return
313 
314 
315  def showRaw(self, useInput, refRel=None, fromScratch=None, what='all',step1Only=False,selected=None):
316 
317  if selected:
318  selected=map(float,selected)
319  for matrixFile in self.files:
320 
321  self.reset(what)
322 
323  if self.what != 'all' and not any('_'+el in matrixFile for el in self.what.split(",")):
324  print("ignoring non-requested file",matrixFile)
325  continue
326 
327  if self.what == 'all' and not self.filesDefault[matrixFile]:
328  print("ignoring file not used by default (enable with -w)",matrixFile)
329  continue
330 
331  try:
332  self.readMatrix(matrixFile, useInput, refRel, fromScratch)
333  except Exception as e:
334  print("ERROR reading file:", matrixFile, str(e))
335  raise
336 
337  if not self.workFlowSteps: continue
338 
339  dataFileName = matrixFile.replace('relval_', 'cmsDriver_')+'_hlt.txt'
340  outFile = open(dataFileName,'w')
341 
342  print("found ", len(self.workFlowSteps), ' workflows for ', dataFileName)
343  ids = sorted(self.workFlowSteps.keys())
344  indexAndSteps=[]
345 
346  writtenWF=0
347  for key in ids:
348  if selected and not (key[0] in selected):
349  continue
350  #trick to skip the HImix IB test
351  if key[0]==203.1 or key[0]==204.1 or key[0]==205.1 or key[0]==4.51 or key[0]==4.52: continue
352  num, name, commands, stepList = self.workFlowSteps[key]
353  wfName,stepNames= name.split('+',1)
354 
355  stepNames=stepNames.replace('+SKIMCOSD','')
356  stepNames=stepNames.replace('+SKIMD','')
357  if 'HARVEST' in stepNames:
358  #find out automatically what to remove
359  exactb=stepNames.index('+HARVEST')
360  exacte=stepNames.index('+',exactb+1) if ('+' in stepNames[exactb+1:]) else (len(stepNames))
361  stepNames=stepNames.replace(stepNames[exactb:exacte],'')
362  otherSteps = None
363  if '+' in stepNames:
364  step1,otherSteps = stepNames.split('+',1)
365 
366  line = str(num) + ' ++ '+ wfName
367  if otherSteps and not step1Only:
368  line += ' ++ ' +otherSteps.replace('+',',')
369  else:
370  line += ' ++ none'
371  inputInfo=None
372  if not isinstance(commands[0],str):
373  inputInfo=commands[0]
374  if otherSteps:
375  for (i,c) in enumerate(otherSteps.split('+')):
376  #pad with set
377  for p in range(len(indexAndSteps),i+2):
378  indexAndSteps.append(set())
379  indexAndSteps[i+1].add((c,commands[i+1]))
380 
381  if inputInfo :
382  #skip the samples from INPUT when step1Only is on
383  if step1Only: continue
384  line += ' ++ REALDATA: '+inputInfo.dataSet
385  if inputInfo.run!=[]: line += ', RUN:'+'|'.join(map(str,inputInfo.run))
386  line += ', FILES: ' +str(inputInfo.files)
387  line += ', EVENTS: '+str(inputInfo.events)
388  if inputInfo.label!='':
389  line += ', LABEL: ' +inputInfo.label
390  line += ', LOCATION:'+inputInfo.location
391  line += ' @@@'
392  else:
393  line += ' @@@ '+commands[0]
394  if self.revertDqmio=='yes':
395  line=line.replace('DQMIO','DQM')
396  writtenWF+=1
397  outFile.write(line+'\n')
398 
399 
400  outFile.write('\n'+'\n')
401  if step1Only: continue
402 
403  for (index,s) in enumerate(indexAndSteps):
404  for (stepName,cmd) in s:
405  stepIndex=index+1
406  if 'dasquery.log' in cmd: continue
407  line = 'STEP%d ++ '%(stepIndex,) +stepName + ' @@@ '+cmd
408  if self.revertDqmio=='yes':
409  line=line.replace('DQMIO','DQM')
410  outFile.write(line+'\n')
411  outFile.write('\n'+'\n')
412  outFile.close()
413  print("wrote ",writtenWF, ' workflow'+('s' if (writtenWF!=1) else ''),' to ', outFile.name)
414  return
415 
416  def workFlowsByLocation(self, cafVeto=True):
417  # Check if we are on CAF
418  onCAF = False
419  if 'cms/caf/cms' in os.environ['CMS_PATH']:
420  onCAF = True
421 
422  workflows = []
423  for workflow in self.workFlows:
424  if isinstance(workflow.cmds[0], InputInfo):
425  if cafVeto and (workflow.cmds[0].location == 'CAF' and not onCAF):
426  continue
427  workflows.append(workflow)
428 
429  return workflows
430 
431  def showWorkFlows(self, selected=None, extended=True, cafVeto=True):
432  if selected: selected = list(map(float,selected))
433  wfs = self.workFlowsByLocation(cafVeto)
434  maxLen = 100 # for summary, limit width of output
435  fmt1 = "%-6s %-35s [1]: %s ..."
436  fmt2 = " %35s [%d]: %s ..."
437  print("\nfound a total of ", len(wfs), ' workflows:')
438  if selected:
439  print(" of which the following", len(selected), 'were selected:')
440  #-ap for now:
441  maxLen = -1 # for individual listing, no limit on width
442  fmt1 = "%-6s %-35s [1]: %s "
443  fmt2 = " %35s [%d]: %s"
444 
445  N=[]
446  for wf in wfs:
447  if selected and float(wf.numId) not in selected: continue
448  if extended: print('')
449  #pad with zeros
450  for i in range(len(N),len(wf.cmds)): N.append(0)
451  N[len(wf.cmds)-1]+=1
452  wfName = wf.nameId
453  stepNames = '+'.join(wf.stepList)
454  for i,s in enumerate(wf.cmds):
455  if extended:
456  if i==0:
457  print(fmt1 % (wf.numId, stepNames, (str(s)+' ')[:maxLen]))
458  else:
459  print(fmt2 % ( ' ', i+1, (str(s)+' ')[:maxLen]))
460  else:
461  print("%-6s %-35s "% (wf.numId, stepNames))
462  break
463  print('')
464  for i,n in enumerate(N):
465  if n: print(n,'workflows with',i+1,'steps')
466 
467  return
468 
469  def createWorkFlows(self, fileNameIn):
470 
471  prefixIn = self.filesPrefMap[fileNameIn]
472 
473  # get through the list of items and update the requested workflows only
474  keyList = self.workFlowSteps.keys()
475  ids = []
476  for item in keyList:
477  id, pref = item
478  if pref != prefixIn : continue
479  ids.append(id)
480  ids.sort()
481  for key in ids:
482  val = self.workFlowSteps[(key,prefixIn)]
483  num, name, commands, stepList = val
484  nameId = str(num)+'_'+name
485  if nameId in self.nameList:
486  print("==> duplicate name found for ", nameId)
487  print(' keeping : ', self.nameList[nameId])
488  print(' ignoring : ', val)
489  else:
490  self.nameList[nameId] = val
491 
492  self.workFlows.append(WorkFlow(num, name, commands=commands, stepList=stepList))
493 
494  return
495 
496  def prepare(self, useInput=None, refRel='', fromScratch=None):
497 
498  for matrixFile in self.files:
499  if self.what != 'all' and not any('_'+el in matrixFile for el in self.what.split(",")):
500  print("ignoring non-requested file",matrixFile)
501  continue
502  if self.what == 'all' and not self.filesDefault[matrixFile]:
503  print("ignoring",matrixFile,"from default matrix")
504  continue
505 
506  try:
507  self.readMatrix(matrixFile, useInput, refRel, fromScratch)
508  except Exception as e:
509  print("ERROR reading file:", matrixFile, str(e))
510  raise
511 
512  try:
513  self.createWorkFlows(matrixFile)
514  except Exception as e:
515  print("ERROR creating workflows :", str(e))
516  raise
517 
518 
519  def show(self, selected=None, extended=True, cafVeto=True):
520 
521  self.showWorkFlows(selected, extended, cafVeto)
522  print('\n','-'*80,'\n')
523 
524 
525  def updateDB(self):
526 
527  import pickle
528  pickle.dump(self.workFlows, open('theMatrix.pkl', 'w') )
529 
530  return
531 
Definition: merge.py:1
revertDqmio
maybe we want too level deep input
Definition: MatrixReader.py:24
def prepare(self, useInput=None, refRel='', fromScratch=None)
bool any(const std::vector< T > &v, const T &what)
Definition: ECalSD.cc:37
def makeCmd(self, step)
def readMatrix(self, fileNameIn, useInput=None, refRel=None, fromScratch=None)
OutputIterator zip(InputIterator1 first1, InputIterator1 last1, InputIterator2 first2, InputIterator2 last2, OutputIterator result, Compare comp)
def makeStep(self, step, overrides)
void print(TMatrixD &m, const char *label=nullptr, bool mathematicaFormat=false)
Definition: Utilities.cc:47
def showWorkFlows(self, selected=None, extended=True, cafVeto=True)
def show(self, selected=None, extended=True, cafVeto=True)
def showRaw(self, useInput, refRel=None, fromScratch=None, what='all', step1Only=False, selected=None)
def reset(self, what='all')
Definition: MatrixReader.py:33
static std::string join(char **cmd)
Definition: RemoteFile.cc:19
def createWorkFlows(self, fileNameIn)
def changeRefRelease(steps, listOfPairs)
Definition: MatrixUtil.py:240
void add(std::map< std::string, TH1 *> &h, TH1 *hist)
def __init__(self, opt)
Definition: MatrixReader.py:19
def workFlowsByLocation(self, cafVeto=True)
#define str(s)