BeamSpotWorkflow.py

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#!/usr/bin/env python
#____________________________________________________________
#
#  BeamSpotWorkflow
#
# A very complicate way to automatize the beam spot workflow
#
# Francisco Yumiceva, Lorenzo Uplegger
# yumiceva@fnal.gov, uplegger@fnal.gov
#
# Fermilab, 2010
#
#____________________________________________________________
 
"""
   BeamSpotWorkflow.py
 
   A very complicate script to upload the results into the DB
 
   usage: %prog -d <data file/directory> -t <tag name>
   -c, --cfg = CFGFILE : Use a different configuration file than the default
   -l, --lock = LOCK   : Create a lock file to have just one script running 
   -o, --overwrite     : Overwrite results files when copying.
   -T, --Test          : Upload files to Test dropbox for data validation.   
   -u, --upload        : Upload files to offline drop box via scp.
   -z, --zlarge        : Enlarge sigmaZ to 10 +/- 0.005 cm.
 
   Francisco Yumiceva (yumiceva@fnal.gov)
   Lorenzo Uplegger   (send an email to Francisco)
   Fermilab 2010
   
"""
from __future__ import print_function
 
 
from builtins import range
import sys,os
import commands, re, time
import datetime
import configparser as ConfigParser
import xmlrpclib
from BeamSpotObj import BeamSpot
from IOVObj import IOV
from CommonMethods import *
 
try: # FUTURE: Python 2.6, prior to 2.6 requires simplejson
    import json
except:
    try:
        import simplejson as json
    except:
        error = "Please set a crab environment in order to get the proper JSON lib"
        exit(error)
 
 
def getLastUploadedIOV(tagName,destDB="oracle://cms_orcoff_prod/CMS_COND_31X_BEAMSPOT"):
    #return 582088327592295
    listIOVCommand = "cmscond_list_iov -c " + destDB + " -P /afs/cern.ch/cms/DB/conddb -t " + tagName 
    dbError = commands.getstatusoutput( listIOVCommand )
    if dbError[0] != 0 :
        if dbError[1].find("metadata entry \"" + tagName + "\" does not exist") != -1:
            print("Creating a new tag because I got the following error contacting the DB")
            print(dbError[1])
            return 1
            #return 133928
        else:
            exit("ERROR: Can\'t connect to db because:\n" + dbError[1])
 
 
    aCommand = listIOVCommand + " | grep DB= | tail -1 | awk \'{print $1}\'"
    output = commands.getstatusoutput( aCommand )
 
    #WARNING when we pass to lumi IOV this should be long long
    if output[1] == '':
        exit("ERROR: The tag " + tagName + " exists but I can't get the value of the last IOV")
 
    return long(output[1])
 
 
def getListOfFilesToProcess(dataSet,lastRun=-1):
    queryCommand = "dbs --search --query \"find file where dataset=" + dataSet
    if lastRun != -1:
        queryCommand = queryCommand + " and run > " + str(lastRun)
    queryCommand = queryCommand + "\" | grep .root"    
#    print " >> " + queryCommand
    output = commands.getstatusoutput( queryCommand )
    return output[1].split('\n')
 
 
def getNumberOfFilesToProcessForRun(dataSet,run):
    queryCommand = "dbs --search --query \"find file where dataset=" + dataSet + " and run = " + str(run) + "\" | grep .root"
    #print " >> " + queryCommand
    output = commands.getstatusoutput( queryCommand )
    if output[0] != 0:
        return 0
    else:
        return len(output[1].split('\n'))
 
 
def getListOfRunsAndLumiFromDBS(dataSet,lastRun=-1):
    datasetList = dataSet.split(',')
    outputList = []
    for data in datasetList:
        queryCommand = "dbs --search --query \"find run,lumi where dataset=" + data
        if lastRun != -1:
            queryCommand = queryCommand + " and run > " + str(lastRun)
        queryCommand += "\""
        print(" >> " + queryCommand)
        output = []
        for i in range(0,3):
            output = commands.getstatusoutput( queryCommand )
            if output[0] == 0 and not (output[1].find("ERROR") != -1 or output[1].find("Error") != -1) :
                break
        if output[0] != 0:
            exit("ERROR: I can't contact DBS for the following reason:\n" + output[1])
        #print output[1]
        tmpList = output[1].split('\n')
        for file in tmpList:
            outputList.append(file)
    runsAndLumis = {}
    for out in outputList:
        regExp = re.search('(\d+)\s+(\d+)',out)
        if regExp:
            run  = long(regExp.group(1))
            lumi = long(regExp.group(2))
            if not run in runsAndLumis:
                runsAndLumis[run] = []
            runsAndLumis[run].append(lumi)
 
#    print runsAndLumis
#    exit("ok")
    return runsAndLumis
 
 
def getListOfRunsAndLumiFromFile(firstRun=-1,fileName=""):
    file = open(fileName);
    jsonFile = file.read();
    file.close()
    jsonList=json.loads(jsonFile);
 
    selected_dcs = {};
    for element in jsonList:
        selected_dcs[long(element)]=jsonList[element]
    return selected_dcs
 
 
def getListOfRunsAndLumiFromRR(firstRun=-1):
    RunReg  ="http://pccmsdqm04.cern.ch/runregistry"
    #RunReg  = "http://localhost:40010/runregistry"
    #Dataset=%Online%
    Group   = "Collisions10"
 
    # get handler to RR XML-RPC server
    FULLADDRESS=RunReg + "/xmlrpc"
    #print "RunRegistry from: ",FULLADDRESS
    server = xmlrpclib.ServerProxy(FULLADDRESS)
    #sel_runtable="{groupName} ='" + Group + "' and {runNumber} > " + str(firstRun) + " and {datasetName} LIKE '" + Dataset + "'"
    sel_runtable="{groupName} ='" + Group + "' and {runNumber} > " + str(firstRun) 
    #sel_dcstable="{groupName} ='" + Group + "' and {runNumber} > " + str(firstRun) + " and {parDcsBpix} = 1 and {parDcsFpix} = 1 and {parDcsTibtid} = 1 and {parDcsTecM} = 1 and {parDcsTecP} = 1 and {parDcsTob} = 1 and {parDcsEbminus} = 1 and {parDcsEbplus} = 1 and {parDcsEeMinus} = 1 and {parDcsEePlus} = 1 and {parDcsEsMinus} = 1 and {parDcsEsPlus} = 1 and {parDcsHbheA} = 1 and {parDcsHbheB} = 1 and {parDcsHbheC} = 1 and {parDcsH0} = 1 and {parDcsHf} = 1"
 
    maxAttempts = 3;
    tries = 0;
    while tries<maxAttempts:
        try:
            run_data = server.DataExporter.export('RUN'           , 'GLOBAL', 'csv_runs', sel_runtable)
            #dcs_data = server.DataExporter.export('RUNLUMISECTION', 'GLOBAL', 'json'    , sel_dcstable)
            break
        except:
            print("Something wrong in accessing runregistry, retrying in 2s....", tries, "/", maxAttempts)
            tries += 1
            time.sleep(2)
        if tries==maxAttempts:
            error = "Run registry unaccessible.....exiting now"
            return {};
 
 
    listOfRuns=[]
    for line in run_data.split("\n"):
        run=line.split(',')[0]
        if run.isdigit():
            listOfRuns.append(run)
 
 
    firstRun = listOfRuns[len(listOfRuns)-1];
    lastRun  = listOfRuns[0];
    sel_dcstable="{groupName} ='" + Group + "' and {runNumber} >= " + str(firstRun) + " and {runNumber} <= " + str(lastRun) + " and {parDcsBpix} = 1 and {parDcsFpix} = 1 and {parDcsTibtid} = 1 and {parDcsTecM} = 1 and {parDcsTecP} = 1 and {parDcsTob} = 1 and {parDcsEbminus} = 1 and {parDcsEbplus} = 1 and {parDcsEeMinus} = 1 and {parDcsEePlus} = 1 and {parDcsEsMinus} = 1 and {parDcsEsPlus} = 1 and {parDcsHbheA} = 1 and {parDcsHbheB} = 1 and {parDcsHbheC} = 1 and {parDcsH0} = 1 and {parDcsHf} = 1"
 
    tries = 0;
    while tries<maxAttempts:
        try:
            #run_data = server.DataExporter.export('RUN'           , 'GLOBAL', 'csv_runs', sel_runtable)
            dcs_data = server.DataExporter.export('RUNLUMISECTION', 'GLOBAL', 'json'    , sel_dcstable)
            break
        except:
            print("I was able to get the list of runs and now I am trying to access the detector status, retrying in 2s....", tries, "/", maxAttempts)
            tries += 1
            time.sleep(2)
        if tries==maxAttempts:
            error = "Run registry unaccessible.....exiting now"
            return {};
 
    selected_dcs={}
    jsonList=json.loads(dcs_data)
 
    #for element in jsonList:
    for element in listOfRuns:
        #if element in listOfRuns:
        if element in jsonList:
            selected_dcs[long(element)]=jsonList[element]
        else:
            print("WARNING: Run " + element + " is a collision10 run with 0 lumis in Run Registry!") 
            selected_dcs[long(element)]= [[]] 
    #print selected_dcs        
    return selected_dcs
 
 
def getLastClosedRun(DBSListOfFiles):
    runs = []
    for file in DBSListOfFiles:
        runNumber = getRunNumberFromDBSName(file)
        if runs.count(runNumber) == 0: 
            runs.append(runNumber)
 
    if len(runs) <= 1: #No closed run
        return -1
    else:
        runs.sort()
        return long(runs[len(runs)-2])
 
 
def getRunNumberFromFileName(fileName):
#    regExp = re.search('(\D+)_(\d+)_(\d+)_(\d+)',fileName)
    regExp = re.search('(\D+)_(\d+)_(\d+)_',fileName)
    if not regExp:
        return -1
    return long(regExp.group(3))
 
 
def getRunNumberFromDBSName(fileName):
    regExp = re.search('(\D+)/(\d+)/(\d+)/(\d+)/(\D+)',fileName)
    if not regExp:
        return -1
    return long(regExp.group(3)+regExp.group(4))
 
 
def getNewRunList(fromDir,lastUploadedIOV):
    newRunList = []
    listOfFiles = ls(fromDir,".txt")
    runFileMap = {}
    for fileName in listOfFiles:
        runNumber = getRunNumberFromFileName(fileName) 
        if runNumber > lastUploadedIOV:
            newRunList.append(fileName)
    return newRunList        
 
 
def selectFilesToProcess(listOfRunsAndLumiFromDBS,listOfRunsAndLumiFromRR,newRunList,runListDir,dataSet,mailList,dbsTolerance,dbsTolerancePercent,rrTolerance,missingFilesTolerance,missingLumisTimeout):
    runsAndLumisProcessed = {}
    runsAndFiles = {}
    for fileName in newRunList:
        file = open(runListDir+fileName)
        for line in file:
            if line.find("Runnumber") != -1:
                run = long(line.replace('\n','').split(' ')[1])
            elif line.find("LumiRange") != -1:
                lumiLine = line.replace('\n','').split(' ')
                begLumi = long(lumiLine[1])
                endLumi = long(lumiLine[3])
                if begLumi != endLumi:
                    error = "The lumi range is greater than 1 for run " + str(run) + " " + line + " in file: " + runListDir + fileName
                    exit(error)
                else:
                    if not run in runsAndLumisProcessed:
                        runsAndLumisProcessed[run] = []
                    if begLumi in runsAndLumisProcessed[run]:
                        print("Lumi " + str(begLumi) + " in event " + str(run) + " already exist. This MUST not happen but right now I will ignore this lumi!")
                    else:    
                        runsAndLumisProcessed[run].append(begLumi)
        if not run in runsAndFiles:
            runsAndFiles[run] = []
        runsAndFiles[run].append(fileName)    
        file.close()
 
    rrKeys = sorted(listOfRunsAndLumiFromRR.keys())
    dbsKeys = listOfRunsAndLumiFromDBS.keys()
    dbsKeys.sort()
    #I remove the last entry from DBS since I am not sure it is an already closed run!
    lastUnclosedRun = dbsKeys.pop()
    #print "Last unclosed run: " + str(lastUnclosedRun)
    procKeys = runsAndLumisProcessed.keys()
    procKeys.sort()
    #print "Run Registry:"    
    #print rrKeys
    #print "DBS:"    
    #print dbsKeys
    #print "List:"    
    #print procKeys
    #print lastUnclosedRun
    filesToProcess = []
    for run in rrKeys:
        RRList = []
        for lumiRange in listOfRunsAndLumiFromRR[run]:
            if lumiRange != []: 
                for l in range(lumiRange[0],lumiRange[1]+1):
                    RRList.append(long(l))
        if run in procKeys and run < lastUnclosedRun:
            #print "run " + str(run) + " is in procKeys"
            if not run in dbsKeys and run != lastUnclosedRun:
                error = "Impossible but run " + str(run) + " has been processed and it is also in the run registry but it is not in DBS!" 
                exit(error)
            print("Working on run " + str(run))
            nFiles = 0
            for data in dataSet.split(','):
                nFiles = getNumberOfFilesToProcessForRun(data,run)
                if nFiles != 0:
                    break
            if len(runsAndFiles[run]) < nFiles:
                print("I haven't processed all files yet : " + str(len(runsAndFiles[run])) + " out of " + str(nFiles) + " for run: " + str(run)) 
                if nFiles - len(runsAndFiles[run]) <= missingFilesTolerance:
                    timeoutManager("DBS_VERY_BIG_MISMATCH_Run"+str(run)) # resetting this timeout
                    timeoutType = timeoutManager("DBS_MISMATCH_Run"+str(run),missingLumisTimeout)
                    if timeoutType == 1:
                        print("WARNING: I previously set a timeout that expired...I'll continue with the script even if I didn't process all the lumis!")
                    else:
                        if timeoutType == -1:
                            print("WARNING: Setting the DBS_MISMATCH_Run" + str(run) + " timeout because I haven't processed all files!")
                        else:
                            print("WARNING: Timeout DBS_MISMATCH_Run" + str(run) + " is in progress.")
                        return filesToProcess
                else:
                    timeoutType = timeoutManager("DBS_VERY_BIG_MISMATCH_Run"+str(run),missingLumisTimeout)
                    if timeoutType == 1:
                        error = "ERROR: I previously set a timeout that expired...I can't continue with the script because there are too many (" + str(nFiles - len(runsAndFiles[run])) + " files missing) and for too long " + str(missingLumisTimeout/3600) + " hours! I will process anyway the runs before this one (" + str(run) + ")"
                        sendEmail(mailList,error)
                        return filesToProcess
                        #exit(error)
                    else:
                        if timeoutType == -1:
                            print("WARNING: Setting the DBS_VERY_BIG_MISMATCH_Run" + str(run) + " timeout because I haven't processed all files!")
                        else:
                            print("WARNING: Timeout DBS_VERY_BIG_MISMATCH_Run" + str(run) + " is in progress.")
                        return filesToProcess
 
            else:
                timeoutManager("DBS_VERY_BIG_MISMATCH_Run"+str(run))
                timeoutManager("DBS_MISMATCH_Run"+str(run))
                print("I have processed " + str(len(runsAndFiles[run])) + " out of " + str(nFiles) + " files that are in DBS. So I should have all the lumis!") 
            errors          = []
            badProcessed    = []
            badDBSProcessed = []
            badDBS          = []
            badRRProcessed  = []
            badRR           = []
            #It is important for runsAndLumisProcessed[run] to be the first because the comparision is not ==
            badDBSProcessed,badDBS = compareLumiLists(runsAndLumisProcessed[run],listOfRunsAndLumiFromDBS[run],errors)
            for i in range(0,len(errors)):
                errors[i] = errors[i].replace("listA","the processed lumis")
                errors[i] = errors[i].replace("listB","DBS")
            #print errors
            #print badProcessed
            #print badDBS
            #exit("ciao")
            if len(badDBS) != 0:
                print("This is weird because I processed more lumis than the ones that are in DBS!")
            if len(badDBSProcessed) != 0 and run in rrKeys:
                lastError = len(errors)
                #print RRList            
                #It is important for runsAndLumisProcessed[run] to be the first because the comparision is not ==
                badRRProcessed,badRR = compareLumiLists(runsAndLumisProcessed[run],RRList,errors)
                for i in range(0,len(errors)):
                    errors[i] = errors[i].replace("listA","the processed lumis")
                    errors[i] = errors[i].replace("listB","Run Registry")
                #print errors
                #print badProcessed
                #print badRunRegistry
 
                if len(badRRProcessed) != 0:    
                    print("I have not processed some of the lumis that are in the run registry for run: " + str(run))
                    for lumi in badDBSProcessed:
                        if lumi in badRRProcessed:
                            badProcessed.append(lumi)
                    lenA = len(badProcessed)
                    lenB = len(RRList)
                    if 100.*lenA/lenB <= dbsTolerancePercent:
                        print("WARNING: I didn't process " + str(100.*lenA/lenB) + "% of the lumis but I am within the " + str(dbsTolerancePercent) + "% set in the configuration. Which corrispond to " + str(lenA) + " out of " + str(lenB) + " lumis")
                        #print errors
                        badProcessed = []
                    elif lenA <= dbsTolerance:
                        print("WARNING: I didn't process " + str(lenA) + " lumis but I am within the " + str(dbsTolerance) + " lumis set in the configuration. Which corrispond to " + str(lenA) + " out of " + str(lenB) + " lumis")
                        #print errors
                        badProcessed = []
                    else:    
                        error = "ERROR: For run " + str(run) + " I didn't process " + str(100.*lenA/lenB) + "% of the lumis and I am not within the " + str(dbsTolerancePercent) + "% set in the configuration. The number of lumis that I didn't process (" + str(lenA) + " out of " + str(lenB) + ") is greater also than the " + str(dbsTolerance) + " lumis that I can tolerate. I can't process runs >= " + str(run) + " but I'll process the runs before!"
                        sendEmail(mailList,error)
                        print(error)
                        return filesToProcess
                        #exit(errors)
                    #return filesToProcess
                elif len(errors) != 0:
                    print("The number of lumi sections processed didn't match the one in DBS but they cover all the ones in the Run Registry, so it is ok!")
                    #print errors
 
            #If I get here it means that I passed or the DBS or the RR test            
            if len(badProcessed) == 0:
                for file in runsAndFiles[run]:
                    filesToProcess.append(file)
            else:
                #print errors
                print("This should never happen because if I have errors I return or exit! Run: " + str(run))
        else:
            error = "Run " + str(run) + " is in the run registry but it has not been processed yet!"
            print(error)
            timeoutType = timeoutManager("MISSING_RUNREGRUN_Run"+str(run),missingLumisTimeout)
            if timeoutType == 1:
                if len(RRList) <= rrTolerance:
                    error = "WARNING: I previously set the MISSING_RUNREGRUN_Run" + str(run) + " timeout that expired...I am missing run " + str(run) + " but it only had " + str(len(RRList)) + " <= " + str(rrTolerance) + " lumis. So I will continue and ignore it... "
                    #print listOfRunsAndLumiFromRR[run]
                    print(error)
                    #sendEmail(mailList,error)
                else:
                    error = "ERROR: I previously set the MISSING_RUNREGRUN_Run" + str(run) + " timeout that expired...I am missing run " + str(run) + " which has " + str(len(RRList)) + " > " + str(rrTolerance) + " lumis. I can't continue but I'll process the runs before this one"
                    sendEmail(mailList,error)
                    return filesToProcess
                    #exit(error)
            else:
                if timeoutType == -1:
                    print("WARNING: Setting the MISSING_RUNREGRUN_Run" + str(run) + " timeout because I haven't processed a run!")
                else:
                    print("WARNING: Timeout MISSING_RUNREGRUN_Run" + str(run) + " is in progress.")
                return filesToProcess
 
    return filesToProcess
 
def compareLumiLists(listA,listB,errors=[],tolerance=0):
    lenA = len(listA)
    lenB = len(listB)
    if lenA < lenB-(lenB*float(tolerance)/100):
        errors.append("ERROR: The number of lumi sections is different: listA(" + str(lenA) + ")!=(" + str(lenB) + ")listB")
    #else:
        #errors.append("Lumi check ok!listA(" + str(lenA) + ")-(" + str(lenB) + ")listB")
    #print errors
    listA.sort()
    listB.sort()
    #shorter = lenA
    #if lenB < shorter:
    #    shorter = lenB
    #a = 0
    #b = 0
    badA = []
    badB = []
    #print listB
    #print listA
    #print len(listA)
    #print len(listB)
    #counter = 1
    for lumi in listA:
        #print str(counter) + "->" + str(lumi)
        #counter += 1
        if not lumi in listB:
            errors.append("Lumi (" + str(lumi) + ") is in listA but not in listB")
            badB.append(lumi)
            #print "Bad B: " + str(lumi)
    #exit("hola")
    for lumi in listB:
        if not lumi in listA:
            errors.append("Lumi (" + str(lumi) + ") is in listB but not in listA")
            badA.append(lumi)
            #print "Bad A: " + str(lumi)
 
    return badA,badB
 
 
def removeUncompleteRuns(newRunList,dataSet):
    processedRuns = {}
    for fileName in newRunList:
        run = getRunNumberFromFileName(fileName)
        if not run in processedRuns:
            processedRuns[run] = 0
        processedRuns[run] += 1
 
    for run in processedRuns.keys():   
        nFiles = getNumberOfFilesToProcessForRun(dataSet,run)
        if processedRuns[run] < nFiles:
            print("I haven't processed all files yet : " + str(processedRuns[run]) + " out of " + str(nFiles) + " for run: " + str(run))
        else:
            print("All files have been processed for run: " + str(run) + " (" + str(processedRuns[run]) + " out of " + str(nFiles) + ")")
 
 
def aselectFilesToProcess(listOfFilesToProcess,newRunList):
    selectedFiles = []
    runsToProcess = {}
    processedRuns = {}
    for file in listOfFilesToProcess:
        run = getRunNumberFromDBSName(file)
#        print "To process: " + str(run) 
        if run not in runsToProcess:
            runsToProcess[run] = 1
        else:
            runsToProcess[run] = runsToProcess[run] + 1 
 
    for file in newRunList:
        run = getRunNumberFromFileName(file)
#        print "Processed: " + str(run)
        if run not in processedRuns:
            processedRuns[run] = 1
        else:
            processedRuns[run] = processedRuns[run] + 1 
 
    #WARNING: getLastClosedRun MUST also have a timeout otherwise the last run will not be considered
    lastClosedRun = getLastClosedRun(listOfFilesToProcess)
#    print "LastClosedRun:-" + str(lastClosedRun) + "-"
 
    processedRunsKeys = sorted(processedRuns.keys())
 
    for run in processedRunsKeys:
        if run <= lastClosedRun :
            print("For run " + str(run) + " I have processed " + str(processedRuns[run]) + " files and in DBS there are " + str(runsToProcess[run]) + " files!")
            if not run in runsToProcess:
                exit("ERROR: I have a result file for run " + str(run) + " but it doesn't exist in DBS. Impossible but it happened!")
            lumiList = getDBSLumiListForRun(run)
            if processedRuns[run] == runsToProcess[run]:
                for file in newRunList:
                    if run == getRunNumberFromFileName(file):
                        selectedFiles.append(file)
            else:
                exit("ERROR: For run " + str(run) + " I have processed " + str(processedRuns[run]) + " files but in DBS there are " + str(runsToProcess[run]) + " files!")
    return selectedFiles            
 
 
def main():
    
    option,args = parse(__doc__)
 
    
    if option.lock:
        setLockName('.' + option.lock)
        if checkLock():
            print("There is already a megascript runnning...exiting")
            return
        else:
            lock()
 
 
    destDB = 'oracle://cms_orcon_prod/CMS_COND_31X_BEAMSPOT'
    if option.Test:
        destDB = 'oracle://cms_orcoff_prep/CMS_COND_BEAMSPOT'
 
    
    cfgFile = "BeamSpotWorkflow.cfg"    
    if option.cfg:
        cfgFile = option.cfg
    configurationFile = os.getenv("CMSSW_BASE") + "/src/RecoVertex/BeamSpotProducer/scripts/" + cfgFile
    configuration     = ConfigParser.ConfigParser()
    print('Reading configuration from ', configurationFile)
    configuration.read(configurationFile)
 
    sourceDir             = configuration.get('Common','SOURCE_DIR')
    archiveDir            = configuration.get('Common','ARCHIVE_DIR')
    workingDir            = configuration.get('Common','WORKING_DIR')
    databaseTag           = configuration.get('Common','DBTAG')
    dataSet               = configuration.get('Common','DATASET')
    fileIOVBase           = configuration.get('Common','FILE_IOV_BASE')
    dbIOVBase             = configuration.get('Common','DB_IOV_BASE')
    dbsTolerance          = float(configuration.get('Common','DBS_TOLERANCE'))
    dbsTolerancePercent   = float(configuration.get('Common','DBS_TOLERANCE_PERCENT'))
    rrTolerance           = float(configuration.get('Common','RR_TOLERANCE'))
    missingFilesTolerance = float(configuration.get('Common','MISSING_FILES_TOLERANCE'))
    missingLumisTimeout   = float(configuration.get('Common','MISSING_LUMIS_TIMEOUT'))
    jsonFileName          = configuration.get('Common','JSON_FILE')
    mailList              = configuration.get('Common','EMAIL')
 
    
    if sourceDir[len(sourceDir)-1] != '/':
        sourceDir = sourceDir + '/'
    if not dirExists(sourceDir):
        error = "ERROR: The source directory " + sourceDir + " doesn't exist!"
        sendEmail(mailList,error)
        exit(error)
 
    if archiveDir[len(archiveDir)-1] != '/':
        archiveDir = archiveDir + '/'
    if not os.path.isdir(archiveDir):
        os.mkdir(archiveDir)
 
    if workingDir[len(workingDir)-1] != '/':
        workingDir = workingDir + '/'
    if not os.path.isdir(workingDir):
        os.mkdir(workingDir)
    else:
        os.system("rm -f "+ workingDir + "*") 
 
 
    print("Getting last IOV for tag: " + databaseTag)
    lastUploadedIOV = 1
    if destDB == "oracle://cms_orcon_prod/CMS_COND_31X_BEAMSPOT": 
        lastUploadedIOV = getLastUploadedIOV(databaseTag)
    else:
        lastUploadedIOV = getLastUploadedIOV(databaseTag,destDB)
 
    #lastUploadedIOV = 133885
    #lastUploadedIOV = 575216380019329
    if dbIOVBase == "lumiid":
        lastUploadedIOV = unpackLumiid(lastUploadedIOV)["run"]
 
    
    print("Getting list of files processed after IOV " + str(lastUploadedIOV))
    newProcessedRunList      = getNewRunList(sourceDir,lastUploadedIOV)
    if len(newProcessedRunList) == 0:
        exit("There are no new runs after " + str(lastUploadedIOV))
 
    
    print("Copying files to archive directory")
    copiedFiles = []
    for i in range(3):
        copiedFiles = cp(sourceDir,archiveDir,newProcessedRunList)    
        if len(copiedFiles) == len(newProcessedRunList):
            break;
    if len(copiedFiles) != len(newProcessedRunList):
        error = "ERROR: I can't copy more than " + str(len(copiedFiles)) + " files out of " + str(len(newProcessedRunList)) 
        sendEmail(mailList,error)
        exit(error)
 
 
    
    print("Getting list of files from DBS")
    listOfRunsAndLumiFromDBS = getListOfRunsAndLumiFromDBS(dataSet,lastUploadedIOV)
    if len(listOfRunsAndLumiFromDBS) == 0:
        exit("There are no files in DBS to process") 
    print("Getting list of files from RR")
    listOfRunsAndLumiFromRR  = getListOfRunsAndLumiFromRR(lastUploadedIOV) 
    if(not listOfRunsAndLumiFromRR):
        print("Looks like I can't get anything from the run registry so I'll get the data from the json file " + jsonFileName)
        listOfRunsAndLumiFromRR  = getListOfRunsAndLumiFromFile(lastUploadedIOV,jsonFileName) 
    
    print("Getting list of files to process")
    selectedFilesToProcess = selectFilesToProcess(listOfRunsAndLumiFromDBS,listOfRunsAndLumiFromRR,copiedFiles,archiveDir,dataSet,mailList,dbsTolerance,dbsTolerancePercent,rrTolerance,missingFilesTolerance,missingLumisTimeout)
    if len(selectedFilesToProcess) == 0:
        exit("There are no files to process")
 
    #print selectedFilesToProcess
    
    print("Copying files from archive to working directory")
    copiedFiles = []
    for i in range(3):
        copiedFiles = cp(archiveDir,workingDir,selectedFilesToProcess)    
        if len(copiedFiles) == len(selectedFilesToProcess):
            break;
        else:
            commands.getstatusoutput("rm -rf " + workingDir)
    if len(copiedFiles) != len(selectedFilesToProcess):
        error = "ERROR: I can't copy more than " + str(len(copiedFiles)) + " files out of " + str(len(selectedFilesToProcess)) + " from " + archiveDir + " to " + workingDir 
        sendEmail(mailList,error)
        exit(error)
 
    print("Sorting and cleaning beamlist")
    beamSpotObjList = []
    for fileName in copiedFiles:
        readBeamSpotFile(workingDir+fileName,beamSpotObjList,fileIOVBase)
 
    sortAndCleanBeamList(beamSpotObjList,fileIOVBase)
 
    if len(beamSpotObjList) == 0:
        error = "WARNING: None of the processed and copied payloads has a valid fit so there are no results. This shouldn't happen since we are filtering using the run register, so there should be at least one good run."
        exit(error)
 
    payloadFileName = "PayloadFile.txt"
 
    runBased = False
    if dbIOVBase == "runnumber":
        runBased = True
 
    payloadList = createWeightedPayloads(workingDir+payloadFileName,beamSpotObjList,runBased)
    if len(payloadList) == 0:
        error = "WARNING: I wasn't able to create any payload even if I have some BeamSpot objects."
        exit(error)
 
 
    tmpPayloadFileName = workingDir + "SingleTmpPayloadFile.txt"
    tmpSqliteFileName  = workingDir + "SingleTmpSqliteFile.db"
 
    writeDBTemplate = os.getenv("CMSSW_BASE") + "/src/RecoVertex/BeamSpotProducer/test/write2DB_template.py"
    readDBTemplate  = os.getenv("CMSSW_BASE") + "/src/RecoVertex/BeamSpotProducer/test/readDB_template.py"
    payloadNumber = -1
    iovSinceFirst = '0';
    iovTillLast   = '0';
 
    #Creating the final name for the combined sqlite file
    uuid = commands.getstatusoutput('uuidgen -t')[1]
    final_sqlite_file_name = databaseTag + '@' + uuid
    sqlite_file     = workingDir + final_sqlite_file_name + ".db"
    metadata_file   = workingDir + final_sqlite_file_name + ".txt"
 
    for payload in payloadList:
        payloadNumber += 1
        if option.zlarge:
            payload.sigmaZ = 10
            payload.sigmaZerr = 2.5e-05
        tmpFile = file(tmpPayloadFileName,'w')
        dumpValues(payload,tmpFile)
        tmpFile.close()
        if not writeSqliteFile(tmpSqliteFileName,databaseTag,dbIOVBase,tmpPayloadFileName,writeDBTemplate,workingDir):
            error = "An error occurred while writing the sqlite file: " + tmpSqliteFileName
            exit(error)
        readSqliteFile(tmpSqliteFileName,databaseTag,readDBTemplate,workingDir)
 
        
        if dbIOVBase == "runnumber":
            iov_since = str(payload.Run)
            iov_till  = iov_since
        elif dbIOVBase == "lumiid":
            iov_since = str( pack(int(payload.Run), int(payload.IOVfirst)) )
            iov_till  = str( pack(int(payload.Run), int(payload.IOVlast)) )
        elif dbIOVBase == "timestamp":
            error = "ERROR: IOV " + dbIOVBase + " still not implemented."
            exit(error)
        else:
            error = "ERROR: IOV " + dbIOVBase + " unrecognized!"
            exit(error)
 
        if payloadNumber == 0:
            iovSinceFirst = iov_since
        if payloadNumber == len(payloadList)-1:
            iovTillLast   = iov_till
 
        appendSqliteFile(final_sqlite_file_name + ".db", tmpSqliteFileName, databaseTag, iov_since, iov_till ,workingDir)
        os.system("rm -f " + tmpPayloadFileName + " " + tmpSqliteFileName)
 
 
    
 
    print(" create MERGED payload card for dropbox ...")
 
    dfile = open(metadata_file,'w')
 
    dfile.write('destDB '  + destDB        +'\n')
    dfile.write('tag '     + databaseTag   +'\n')
    dfile.write('inputtag'                 +'\n')
    dfile.write('since '   + iovSinceFirst +'\n')
    #dfile.write('till '    + iov_till      +'\n')
    dfile.write('Timetype '+ dbIOVBase     +'\n')
 
    
    print("WARNING TAG TYPE forced to be just offline")
    tagType = "offline"
    checkType = tagType
    if tagType == "express":
        checkType = "hlt"
    dfile.write('IOVCheck ' + checkType + '\n')
    dfile.write('usertext Beam spot position\n')
 
    dfile.close()
 
 
 
    if option.upload:
        print(" scp files to offline Drop Box")
        dropbox = "/DropBox"
        if option.Test:
            dropbox = "/DropBox_test"
        print("UPLOADING TO TEST DB")
        uploadSqliteFile(workingDir, final_sqlite_file_name, dropbox)
 
    archive_sqlite_file_name = "Payloads_" + iovSinceFirst + "_" + iovTillLast + "_" + final_sqlite_file_name
    archive_results_file_name = "Payloads_" + iovSinceFirst + "_" + iovTillLast + "_" + databaseTag + ".txt"
    if not os.path.isdir(archiveDir + 'payloads'):
        os.mkdir(archiveDir + 'payloads')
    commands.getstatusoutput('mv ' + sqlite_file   + ' ' + archiveDir + 'payloads/' + archive_sqlite_file_name + '.db')
    commands.getstatusoutput('mv ' + metadata_file + ' ' + archiveDir + 'payloads/' + archive_sqlite_file_name + '.txt')
    commands.getstatusoutput('cp ' + workingDir + payloadFileName + ' ' + archiveDir + 'payloads/' + archive_results_file_name)
 
    print(archiveDir + "payloads/" + archive_sqlite_file_name + '.db')
    print(archiveDir + "payloads/" + archive_sqlite_file_name + '.txt')
 
    rmLock()
 
if __name__ == '__main__':
    main()