validateAlignments Namespace Reference

Classes
class	ParallelMergeJob
	— Classes —############################ More...
class	ValidationJob

Functions
def	createMergeScript (path, validations, options)
def	loadTemplates (config)
def	main (argv=None)
	— Main —############################ More...

Function Documentation

def validateAlignments.createMergeScript	(		path,
			validations,
			options
	)

Definition at line 289 of file validateAlignments.py.

References mps_setup.append, and helperFunctions.replaceByMap().

Referenced by main().

def createMergeScript( path, validations, options ):
    if(len(validations) == 0):
        raise AllInOneError("Cowardly refusing to merge nothing!")

    config = validations[0].config
    repMap = config.getGeneral()
    repMap.update({
            "DownloadData":"",
            "CompareAlignments":"",
            "RunValidationPlots":"",
            "CMSSW_BASE": os.environ["CMSSW_BASE"],
            "SCRAM_ARCH": os.environ["SCRAM_ARCH"],
            "CMSSW_RELEASE_BASE": os.environ["CMSSW_RELEASE_BASE"],
            })

    comparisonLists = {} # directory of lists containing the validations that are comparable
    for validation in validations:
        for referenceName in validation.filesToCompare:
            validationtype = type(validation)
            if issubclass(validationtype, PreexistingValidation):
                #find the actual validationtype
                for parentclass in validationtype.mro():
                    if not issubclass(parentclass, PreexistingValidation):
                        validationtype = parentclass
                        break
            key = (validationtype, referenceName)
            if key in comparisonLists:
                comparisonLists[key].append(validation)
            else:
                comparisonLists[key] = [validation]

    # introduced to merge individual validation outputs separately
    #  -> avoids problems with merge script
    repMap["doMerge"] = "mergeRetCode=0\n"
    repMap["rmUnmerged"] = ("if [[ mergeRetCode -eq 0 ]]; then\n"
                            "    echo -e \\n\"Merging succeeded, removing original files.\"\n")
    repMap["beforeMerge"] = ""
    repMap["mergeParallelFilePrefixes"] = ""
    repMap["createResultsDirectory"]=""
    

    anythingToMerge = []
    
    
    #prepare dictionary containing handle objects for parallel merge batch jobs
    if options.mergeOfflineParallel:
        parallelMergeObjects={}
    for (validationType, referencename), validations in six.iteritems(comparisonLists):
        for validation in validations:
            #parallel merging
            if (isinstance(validation, PreexistingValidation)
                or validation.NJobs == 1
                or not isinstance(validation, ParallelValidation)):
                    continue
            if options.mergeOfflineParallel and validationType.valType=='offline' and validation.jobmode.split(",")[0]=="lxBatch":
                repMapTemp=repMap.copy()
                if validationType not in anythingToMerge:
                    anythingToMerge += [validationType]
                    #create init script
                    fileName="TkAlMergeInit"
                    filePath = os.path.join(path, fileName+".sh")
                    theFile = open( filePath, "w" )
                    repMapTemp["createResultsDirectory"]="#!/bin/bash"
                    repMapTemp["createResultsDirectory"]+=replaceByMap(configTemplates.createResultsDirectoryTemplate, repMapTemp)
                    theFile.write( replaceByMap( configTemplates.createResultsDirectoryTemplate, repMapTemp ) )
                    theFile.close()
                    os.chmod(filePath,0o755)
                    #create handle
                    parallelMergeObjects["init"]=ParallelMergeJob(fileName, filePath,[])
                    #clear 'create result directory' code
                    repMapTemp["createResultsDirectory"]=""
                
                #edit repMapTmp as necessary:
                #fill contents of mergeParallelResults
                repMapTemp["beforeMerge"] += validationType.doInitMerge()
                repMapTemp["doMerge"] += '\n\n\n\necho -e "\n\nMerging results from %s jobs with alignment %s"\n\n' % (validationType.valType,validation.alignmentToValidate.name)
                repMapTemp["doMerge"] += validation.doMerge()
                for f in validation.getRepMap()["outputFiles"]:
                    longName = os.path.join("/eos/cms/store/group/alca_trackeralign/AlignmentValidation/",
                                            validation.getRepMap()["eosdir"], f)
                    repMapTemp["rmUnmerged"] += "    rm "+longName+"\n"
                
                repMapTemp["rmUnmerged"] += ("else\n"
                             "    echo -e \\n\"WARNING: Merging failed, unmerged"
                             " files won't be deleted.\\n"
                             "(Ignore this warning if merging was done earlier)\"\n"
                             "fi\n")
                
                #fill mergeParallelResults area of mergeTemplate
                repMapTemp["DownloadData"] = replaceByMap( configTemplates.mergeParallelResults, repMapTemp )
                #fill runValidationPlots area of mergeTemplate
                repMapTemp["RunValidationPlots"] = validationType.doRunPlots(validations)
                
                #create script file
                fileName="TkAlMergeOfflineValidation"+validation.name+validation.alignmentToValidate.name
                filePath = os.path.join(path, fileName+".sh")
                theFile = open( filePath, "w" )
                theFile.write( replaceByMap( configTemplates.mergeParallelOfflineTemplate, repMapTemp ) )
                theFile.close()
                os.chmod(filePath,0o755)
                #create handle object
                if "parallel" in parallelMergeObjects:
                    parallelMergeObjects["parallel"].append(ParallelMergeJob(fileName, filePath,[]))
                else:
                    parallelMergeObjects["parallel"]=[ParallelMergeJob(fileName, filePath,[])]
                continue
                
                
            else:
                if validationType not in anythingToMerge:
                    anythingToMerge += [validationType]
                    repMap["doMerge"] += '\n\n\n\necho -e "\n\nMerging results from %s jobs"\n\n' % validationType.valType
                    repMap["beforeMerge"] += validationType.doInitMerge()
                repMap["doMerge"] += validation.doMerge()
                for f in validation.getRepMap()["outputFiles"]:
                    longName = os.path.join("/eos/cms/store/group/alca_trackeralign/AlignmentValidation/",
                                            validation.getRepMap()["eosdir"], f)
                    repMap["rmUnmerged"] += "    rm "+longName+"\n"
                
                
    
    repMap["rmUnmerged"] += ("else\n"
                             "    echo -e \\n\"WARNING: Merging failed, unmerged"
                             " files won't be deleted.\\n"
                             "(Ignore this warning if merging was done earlier)\"\n"
                             "fi\n")
    
    
    
    if anythingToMerge:
        repMap["DownloadData"] += replaceByMap( configTemplates.mergeParallelResults, repMap )
    else:
        repMap["DownloadData"] = ""

    repMap["RunValidationPlots"] = ""
    for (validationType, referencename), validations in six.iteritems(comparisonLists):
        if issubclass(validationType, ValidationWithPlots):
            repMap["RunValidationPlots"] += validationType.doRunPlots(validations)

    repMap["CompareAlignments"] = "#run comparisons"
    for (validationType, referencename), validations in six.iteritems(comparisonLists):
        if issubclass(validationType, ValidationWithComparison):
            repMap["CompareAlignments"] += validationType.doComparison(validations)
    
    #if user wants to merge parallely and if there are valid parallel scripts, create handle for plotting job and set merge script name accordingly
    if options.mergeOfflineParallel and parallelMergeObjects!={}:
        parallelMergeObjects["continue"]=ParallelMergeJob("TkAlMergeFinal",os.path.join(path, "TkAlMergeFinal.sh"),[])
        filePath = os.path.join(path, "TkAlMergeFinal.sh")
    #if not merging parallel, add code to create results directory and set merge script name accordingly
    else:
        repMap["createResultsDirectory"]=replaceByMap(configTemplates.createResultsDirectoryTemplate, repMap)
        filePath = os.path.join(path, "TkAlMerge.sh")
    
    
    #filePath = os.path.join(path, "TkAlMerge.sh")
    theFile = open( filePath, "w" )
    theFile.write( replaceByMap( configTemplates.mergeTemplate, repMap ) )
    theFile.close()
    os.chmod(filePath,0o755)
    
    if options.mergeOfflineParallel:
        return {'TkAlMerge.sh':filePath, 'parallelMergeObjects':parallelMergeObjects}
    else:
        return filePath
    

def validateAlignments.loadTemplates

(

config

)

Definition at line 454 of file validateAlignments.py.

References configTemplates.alternateTemplate().

Referenced by main().

def loadTemplates( config ):
    if config.has_section("alternateTemplates"):
        for templateName in config.options("alternateTemplates"):
            if templateName == "AutoAlternates":
                continue
            newTemplateName = config.get("alternateTemplates", templateName )
            #print "replacing default %s template by %s"%( templateName, newTemplateName)
            configTemplates.alternateTemplate(templateName, newTemplateName)

    

def validateAlignments.main

(

argv = None

)

— Main —############################

Definition at line 465 of file validateAlignments.py.

References createMergeScript(), cmsRelvalreport.exit, helperFunctions.getCommandOutput2(), createfilelist.int, join(), loadTemplates(), genParticles_cff.map, GetRecoTauVFromDQM_MC_cff.next, edm.print(), split, str, and digitizers_cfi.strip.

def main(argv = None):
    if argv == None:
       argv = sys.argv[1:]
    optParser = optparse.OptionParser()
    optParser.description = """All-in-one Alignment Validation.
This will run various validation procedures either on batch queues or interactively.
If no name is given (-N parameter) a name containing time and date is created automatically.
To merge the outcome of all validation procedures run TkAlMerge.sh in your validation's directory.
"""
    optParser.add_option("-n", "--dryRun", dest="dryRun", action="store_true", default=False,
                         help="create all scripts and cfg File but do not start jobs (default=False)")
    optParser.add_option( "--getImages", dest="getImages", action="store_true", default=True,
                          help="get all Images created during the process (default= True)")
    defaultConfig = "TkAlConfig.ini"
    optParser.add_option("-c", "--config", dest="config", default = defaultConfig,
                         help="configuration to use (default TkAlConfig.ini) this can be a comma-seperated list of all .ini file you want to merge", metavar="CONFIG")
    optParser.add_option("-N", "--Name", dest="Name",
                         help="Name of this validation (default: alignmentValidation_DATE_TIME)", metavar="NAME")
    optParser.add_option("-r", "--restrictTo", dest="restrictTo",
                         help="restrict validations to given modes (comma seperated) (default: no restriction)", metavar="RESTRICTTO")
    optParser.add_option("-s", "--status", dest="crabStatus", action="store_true", default = False,
                         help="get the status of the crab jobs", metavar="STATUS")
    optParser.add_option("-d", "--debug", dest="debugMode", action="store_true",
                         default = False,
                         help="run the tool to get full traceback of errors",
                         metavar="DEBUG")
    optParser.add_option("-m", "--autoMerge", dest="autoMerge", action="store_true", default = False,
                         help="submit TkAlMerge.sh to run automatically when all jobs have finished (default=False)."
                              " Works only for batch jobs")
    optParser.add_option("--mergeOfflineParallel", dest="mergeOfflineParallel", action="store_true", default = False,
                         help="Enable parallel merging of offline data. Best used with -m option. Only works with lxBatch-jobmode", metavar="MERGE_PARALLEL")


    (options, args) = optParser.parse_args(argv)

    if not options.restrictTo == None:
        options.restrictTo = options.restrictTo.split(",")

    options.config = [ os.path.abspath( iniFile ) for iniFile in \
                       options.config.split( "," ) ]
    config = BetterConfigParser()
    outputIniFileSet = set( config.read( options.config ) )
    failedIniFiles = [ iniFile for iniFile in options.config if iniFile not in outputIniFileSet ]

    # Check for missing ini file
    if options.config == [ os.path.abspath( defaultConfig ) ]:
        if ( not options.crabStatus ) and \
               ( not os.path.exists( defaultConfig ) ):
                raise AllInOneError( "Default 'ini' file '%s' not found!\n"
                                       "You can specify another name with the "
                                       "command line option '-c'/'--config'."
                                       %( defaultConfig ))
    else:
        for iniFile in failedIniFiles:
            if not os.path.exists( iniFile ):
                raise AllInOneError( "'%s' does not exist. Please check for "
                                       "typos in the filename passed to the "
                                       "'-c'/'--config' option!"
                                       %( iniFile ))
            else:
                raise AllInOneError(( "'%s' does exist, but parsing of the "
                                       "content failed!" ) % iniFile)

    # get the job name
    if options.Name == None:
        if not options.crabStatus:
            options.Name = "alignmentValidation_%s"%(datetime.datetime.now().strftime("%y%m%d_%H%M%S"))
        else:
            existingValDirs = fnmatch.filter( os.walk( '.' ).next()[1],
                                              "alignmentValidation_*" )
            if len( existingValDirs ) > 0:
                options.Name = existingValDirs[-1]
            else:
                print("Cannot guess last working directory!")
                print ( "Please use the parameter '-N' or '--Name' to specify "
                        "the task for which you want a status report." )
                return 1

    # set output path
    outPath = os.path.abspath( options.Name )

    # Check status of submitted jobs and return
    if options.crabStatus:
        os.chdir( outPath )
        crabLogDirs = fnmatch.filter( os.walk('.').next()[1], "crab.*" )
        if len( crabLogDirs ) == 0:
            print("Found no crab tasks for job name '%s'"%( options.Name ))
            return 1
        theCrab = crabWrapper.CrabWrapper()
        for crabLogDir in crabLogDirs:
            print()
            print("*" + "=" * 78 + "*")
            print ( "| Status report and output retrieval for:"
                    + " " * (77 - len( "Status report and output retrieval for:" ) )
                    + "|" )
            taskName = crabLogDir.replace( "crab.", "" )
            print("| " + taskName + " " * (77 - len( taskName ) ) + "|")
            print("*" + "=" * 78 + "*")
            print()
            crabOptions = { "-getoutput":"",
                            "-c": crabLogDir }
            try:
                theCrab.run( crabOptions )
            except AllInOneError as e:
                print("crab:  No output retrieved for this task.")
            crabOptions = { "-status": "",
                            "-c": crabLogDir }
            theCrab.run( crabOptions )
        return

    general = config.getGeneral()
    config.set("internals","workdir",os.path.join(general["workdir"],options.Name) )
    config.set("internals","scriptsdir",outPath)
    config.set("general","datadir",os.path.join(general["datadir"],options.Name) )
    config.set("general","logdir",os.path.join(general["logdir"],options.Name) )
    config.set("general","eosdir",os.path.join("AlignmentValidation", general["eosdir"], options.Name) )

    if not os.path.exists( outPath ):
        os.makedirs( outPath )
    elif not os.path.isdir( outPath ):
        raise AllInOneError("the file %s is in the way rename the Job or move it away"%outPath)

    # replace default templates by the ones specified in the "alternateTemplates" section
    loadTemplates( config )

    #save backup configuration file
    backupConfigFile = open( os.path.join( outPath, "usedConfiguration.ini" ) , "w"  )
    config.write( backupConfigFile )

    #copy proxy, if there is one
    try:
        proxyexists = int(getCommandOutput2("voms-proxy-info --timeleft")) > 10
    except RuntimeError:
        proxyexists = False

    if proxyexists:
        shutil.copyfile(getCommandOutput2("voms-proxy-info --path").strip(), os.path.join(outPath, ".user_proxy"))

    validations = []
    for validation in config.items("validation"):
        alignmentList = [validation[1]]
        validationsToAdd = [(validation[0],alignment) \
                                for alignment in alignmentList]
        validations.extend(validationsToAdd)
    jobs = [ ValidationJob( validation, config, options) \
                 for validation in validations ]
    for job in jobs:
        if job.needsproxy and not proxyexists:
            raise AllInOneError("At least one job needs a grid proxy, please init one.")
    map( lambda job: job.createJob(), jobs )
    validations = [ job.getValidation() for job in jobs ]

    if options.mergeOfflineParallel:
        parallelMergeObjects=createMergeScript(outPath, validations, options)['parallelMergeObjects']
    else:
        createMergeScript(outPath, validations, options)


    print()
    map( lambda job: job.runJob(), jobs )

    if options.autoMerge and ValidationJob.jobCount == ValidationJob.batchCount and config.getGeneral()["jobmode"].split(",")[0] == "lxBatch":
        print(">             Automatically merging jobs when they have ended")
        # if everything is done as batch job, also submit TkAlMerge.sh to be run
        # after the jobs have finished
        
        #if parallel merge scripts: manage dependencies
        if options.mergeOfflineParallel and parallelMergeObjects!={}:
            initID=parallelMergeObjects["init"].runJob(config).split("<")[1].split(">")[0]
            parallelIDs=[]
            for parallelMergeScript in parallelMergeObjects["parallel"]:
                parallelMergeScript.addDependency(initID)
                for job in jobs:
                    if isinstance(job.validation, OfflineValidation) and "TkAlMerge"+job.validation.alignmentToValidate.name==parallelMergeScript.name:
                        parallelMergeScript.addDependency(job.JobId)
                parallelIDs.append(parallelMergeScript.runJob(config).split("<")[1].split(">")[0])
            parallelMergeObjects["continue"].addDependency(parallelIDs)
            parallelMergeObjects["continue"].addDependency(ValidationJob.batchJobIds)
            parallelMergeObjects["continue"].runJob(config)
            
            
        
    
        else:
            repMap = {
                "commands": config.getGeneral()["jobmode"].split(",")[1],
                "jobName": "TkAlMerge",
                "logDir": config.getGeneral()["logdir"],
                "script": "TkAlMerge.sh",
                "bsub": "/afs/cern.ch/cms/caf/scripts/cmsbsub",
                "conditions": '"' + " && ".join(["ended(" + jobId + ")" for jobId in ValidationJob.batchJobIds]) + '"'
                }
            for ext in ("stdout", "stderr", "stdout.gz", "stderr.gz"):
                oldlog = "%(logDir)s/%(jobName)s."%repMap + ext
                if os.path.exists(oldlog):
                    os.remove(oldlog)

            #issue job
            getCommandOutput2("%(bsub)s %(commands)s "
                            "-o %(logDir)s/%(jobName)s.stdout "
                            "-e %(logDir)s/%(jobName)s.stderr "
                            "-w %(conditions)s "
                            "%(logDir)s/%(script)s"%repMap)