validateAlignments.ValidationBase Class Reference

— Classes —############################ More...

Inheritance diagram for validateAlignments.ValidationBase:

Public Member Functions
def	__init__ (self, validation, config, options)
def	createJob (self)
def	getValidation (self)
def	needsproxy (self)
def	runJob (self)

Public Attributes
	alignments
	commandLineOptions
	config
	preexisting
	valName
	valSection
	valType

Static Private Attributes
	__metaclass__

Detailed Description

— Classes —############################

Definition at line 55 of file validateAlignments.py.

Constructor & Destructor Documentation

def validateAlignments.ValidationBase.__init__	(		self,
			validation,
			config,
			options
	)

Definition at line 59 of file validateAlignments.py.

References split.

    def __init__( self, validation, config, options ):

        if validation[1] == "":
            # intermediate syntax
            valString = validation[0].split( "->" )[0]
            self.alignments = validation[0].split( "->" )[1]
            # force user to use the normal syntax
            if "->" in validation[0]:
                msg = ("Instead of using the intermediate syntax\n'"
                       +valString.strip()+"-> "+alignments.strip()
                       +":'\nyou have to use the now fully supported syntax \n'"
                       +valString.strip()+": "
                       +alignments.strip()+"'.")
                raise AllInOneError(msg)
        else:
            valString = validation[0]
            self.alignments = validation[1]
        valString = valString.split()
        self.valType = valString[0]
        self.valName = valString[1]
        self.commandLineOptions = options
        self.config = config
        self.preexisting = ("preexisting" in self.valType)
        if self.valType[0] == "*":
            self.valType = self.valType[1:]
            self.preexisting = True

        # workaround for intermediate parallel version
        if self.valType == "offlineParallel":
            print ("offlineParallel and offline are now the same.  To run an offline parallel validation,\n"
                   "just set parallelJobs to something > 1.  There is no reason to call it offlineParallel anymore.")
            self.valType = "offline"
        self.valSection = self.valType + ":" + self.valName
        if not self.config.has_section( self.valSection ):
            raise AllInOneError("Validation '%s' of type '%s' is requested in"
                                " '[validation]' section, but is not defined."
                                  "\nYou have to add a '[%s]' section."
                                  %( self.valName, self.valType, self.valSection ))

Member Function Documentation

def validateAlignments.ValidationBase.createJob

(

self

)

Definition at line 100 of file validateAlignments.py.

    def createJob( self ):
        pass

def validateAlignments.ValidationBase.getValidation

(

self

)

Definition at line 108 of file validateAlignments.py.

    def getValidation( self ):
        pass

def validateAlignments.ValidationBase.needsproxy

(

self

)

Definition at line 112 of file validateAlignments.py.

    def needsproxy(self):
        pass

def validateAlignments.ValidationBase.runJob

(

self

)

Definition at line 104 of file validateAlignments.py.

    def runJob( self ):
        pass

Member Data Documentation

validateAlignments.ValidationBase.__metaclass__

staticprivate

Definition at line 57 of file validateAlignments.py.

validateAlignments.ValidationBase.alignments

Definition at line 64 of file validateAlignments.py.

validateAlignments.ValidationBase.commandLineOptions

Definition at line 79 of file validateAlignments.py.

validateAlignments.ValidationBase.config

Definition at line 80 of file validateAlignments.py.

validateAlignments.ValidationBase.preexisting

Definition at line 81 of file validateAlignments.py.

Referenced by validateAlignments.ValidationJob.__createJob(), validateAlignments.ValidationJob.needsproxy(), validateAlignments.ValidationJobMultiIOV.needsproxy(), and validateAlignments.ValidationJob.runJob().

validateAlignments.ValidationBase.valName

Definition at line 78 of file validateAlignments.py.

Referenced by validateAlignments.ValidationJob.runJob().

validateAlignments.ValidationBase.valSection

Definition at line 91 of file validateAlignments.py.

validateAlignments.ValidationBase.valType

Definition at line 77 of file validateAlignments.py.

Referenced by preexistingValidation.PreexistingValidation.getRepMap(), genericValidation.GenericValidation.getRepMap(), and validateAlignments.ValidationJob.runJob().