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useReflexToDescribeForGenObject.py File Reference

Go to the source code of this file.

Namespaces

 useReflexToDescribeForGenObject
 

Functions

def useReflexToDescribeForGenObject.genObjectDef
 
def useReflexToDescribeForGenObject.genObjNameDef
 
def useReflexToDescribeForGenObject.getObjectList
 

Variables

string useReflexToDescribeForGenObject.action = 'store_true'
 
tuple useReflexToDescribeForGenObject.alphaRE = re.compile(r'(\w+)')
 
tuple useReflexToDescribeForGenObject.colonRE = re.compile(r':')
 
string useReflexToDescribeForGenObject.default = ''
 
dictionary useReflexToDescribeForGenObject.defsDict
 
string useReflexToDescribeForGenObject.defTemplate
 
tuple useReflexToDescribeForGenObject.dotRE = re.compile(r'\.')
 
tuple useReflexToDescribeForGenObject.goName = options.goNameorcolonRE.sub('', objectName)
 
string useReflexToDescribeForGenObject.help = 'GenObject name'
 
tuple useReflexToDescribeForGenObject.nonAlphaRE = re.compile(r'\W')
 
tuple useReflexToDescribeForGenObject.objectName = GenObject.decodeNonAlphanumerics(args[0])
 
string useReflexToDescribeForGenObject.outputFile = options.outputorgoName+'.txt'
 
 useReflexToDescribeForGenObject.parser = optparse.OptionParser\
 
dictionary useReflexToDescribeForGenObject.root2GOtypeDict
 
string useReflexToDescribeForGenObject.startString
 
tuple useReflexToDescribeForGenObject.targetFile = open(outputFile, 'w')
 
tuple useReflexToDescribeForGenObject.vetoedTypes = set()