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chain.py
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1 # Copyright (C) 2014 Colin Bernet
2 # https://github.com/cbernet/heppy/blob/master/LICENSE
3 
4 import glob
5 import os
6 import pprint
7 from ROOT import TChain, TFile, TTree, gSystem
8 
9 def is_pfn(fn):
10  return not (is_lfn(fn) or is_rootfn(fn))
11 
12 def is_lfn(fn):
13  return fn.startswith("/store")
14 
15 def is_rootfn(fn):
16  """
17  To open files like root://, file:// which os.isfile won't find.
18  """
19  return "://" in fn
20 
21 
22 class Chain( object ):
23  """Wrapper to TChain, with a python iterable interface.
24 
25  Example of use: #TODO make that a doctest / nose?
26  from chain import Chain
27  the_chain = Chain('../test/test_*.root', 'test_tree')
28  event3 = the_chain[2]
29  print event3.var1
30 
31  for event in the_chain:
32  print event.var1
33  """
34 
35  def __init__(self, input, tree_name=None):
36  """
37  Create a chain.
38 
39  Parameters:
40  input = either a list of files or a wildcard (e.g. 'subdir/*.root').
41  In the latter case all files matching the pattern will be used
42  to build the chain.
43  tree_name = key of the tree in each file.
44  if None and if each file contains only one TTree,
45  this TTree is used.
46  """
47  self.files = input
48  if isinstance(input, basestring): # input is a pattern
49  self.files = glob.glob(input)
50  if len(self.files)==0:
51  raise ValueError('no matching file name: '+input)
52  else: # case of a list of files
53  if False in [
54  ((is_pfn(fnam) and os.path.isfile(fnam)) or
55  is_lfn(fnam)) or is_rootfn(fnam)
56  for fnam in self.files]:
57  err = 'at least one input file does not exist\n'
58  err += pprint.pformat(self.files)
59  raise ValueError(err)
60  if tree_name is None:
61  tree_name = self._guessTreeName(input)
62  self.chain = TChain(tree_name)
63  for file in self.files:
64  self.chain.Add(file)
65 
66  def _guessTreeName(self, pattern):
67  """
68  Find the set of keys of all TTrees in all files matching pattern.
69  If the set contains only one key
70  Returns: the TTree key
71  else raises ValueError.
72  """
73  names = []
74  for fnam in self.files:
75  rfile = TFile(fnam)
76  for key in rfile.GetListOfKeys():
77  obj = rfile.Get(key.GetName())
78  if type(obj) is TTree:
79  names.append( key.GetName() )
80  thename = set(names)
81  if len(thename)==1:
82  return list(thename)[0]
83  else:
84  err = [
85  'several TTree keys in {pattern}:'.format(
86  pattern=pattern
87  ),
88  ','.join(thename)
89  ]
90  raise ValueError('\n'.join(err))
91 
92  def __getattr__(self, attr):
93  """
94  All functions of the wrapped TChain are made available
95  """
96  return getattr(self.chain, attr)
97 
98  def __iter__(self):
99  return iter(self.chain)
100 
101  def __len__(self):
102  return int(self.chain.GetEntries())
103 
104  def __getitem__(self, index):
105  """
106  Returns the event at position index.
107  """
108  self.chain.GetEntry(index)
109  return self.chain
110 
111 
def is_pfn
Definition: chain.py:9
def is_lfn
Definition: chain.py:12
def _guessTreeName
Definition: chain.py:66
def __iter__
Definition: chain.py:98
static std::string join(char **cmd)
Definition: RemoteFile.cc:18
def __init__
Definition: chain.py:35
def is_rootfn
Definition: chain.py:15
def __getattr__
Definition: chain.py:92
How EventSelector::AcceptEvent() decides whether to accept an event for output otherwise it is excluding the probing of A single or multiple positive and the trigger will pass if any such matching triggers are PASS or EXCEPTION[A criterion thatmatches no triggers at all is detected and causes a throw.] A single negative with an expectation of appropriate bit checking in the decision and the trigger will pass if any such matching triggers are FAIL or EXCEPTION A wildcarded negative criterion that matches more than one trigger in the trigger list("!*","!HLTx*"if it matches 2 triggers or more) will accept the event if all the matching triggers are FAIL.It will reject the event if any of the triggers are PASS or EXCEPTION(this matches the behavior of"!*"before the partial wildcard feature was incorporated).Triggers which are in the READY state are completely ignored.(READY should never be returned since the trigger paths have been run
def __len__
Definition: chain.py:101
def __getitem__
Definition: chain.py:104