/afs/cern.ch/work/a/aaltunda/public/www/CMSSW_5_3_13_patch3/src/Alignment/LaserAlignment/src/LASBarrelAlgorithm.cc

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#include "Alignment/LaserAlignment/interface/LASBarrelAlgorithm.h"


// this is ugly but we need it for Minuit
// until a better solution is at hand
LASGlobalData<LASCoordinateSet>* aMeasuredCoordinates;
LASGlobalData<LASCoordinateSet>* aNominalCoordinates;





LASBarrelAlgorithm::LASBarrelAlgorithm() {

  minuit = new TMinuit( 52 );
  
}





LASBarrelAlignmentParameterSet LASBarrelAlgorithm::CalculateParameters( LASGlobalData<LASCoordinateSet>& measuredCoordinates,
                                                                        LASGlobalData<LASCoordinateSet>& nominalCoordinates   ) {
  
  std::cout << " [LASBarrelAlgorithm::CalculateParameters] -- Starting." << std::endl;


  // for testing..
  //ReadMisalignmentFromFile( "misalign-var.txt", measuredCoordinates, nominalCoordinates );
    

  // statics for minuit
  aMeasuredCoordinates = &measuredCoordinates;
  aNominalCoordinates  = &nominalCoordinates;

  // minimizer and variables for it
  minuit->SetFCN( fcn );
  double arglist[10];
  int _ierflg = 0;

  // toggle minuit blabla
  arglist[0] = -1;
  minuit->mnexcm( "SET PRI", arglist, 1, _ierflg );

  // set par errors
  arglist[0] = 1;
  minuit->mnexcm( "SET ERR", arglist ,1, _ierflg );


  //
  // define 52 parameters
  //

  // start values: to be evacuated to cfg
  static float _vstart[52] = {
    0.00, 0.00, 0.0, 0.0, 0.0, 0.0, // subdet for TIB+
    0.00, 0.00, 0.0, 0.0, 0.0, 0.0, // subdet for TIB-
    0.00, 0.00, 0.0, 0.0, 0.0, 0.0, // subdet for TOB+
    0.00, 0.00, 0.0, 0.0, 0.0, 0.0, // subdet for TOB-
    0.00, 0.00, 0.0, 0.0, 0.0, 0.0, // subdet for TEC+
    0.00, 0.00, 0.0, 0.0, 0.0, 0.0, // subdet for TEC-
    0.00, 0.00,  0.00, 0.00,  0.00, 0.00,  0.00, 0.00, // beams 0-3
    0.00, 0.00,  0.00, 0.00,  0.00, 0.00,  0.00, 0.00  // beams 4-7
  };


  // ReadStartParametersFromFile( "startParameters.txt", _vstart ); // debug


  // step sizes: to be tuned, to be evacuated to cfg
  static float _vstep[52] = { 
    0.001, 0.001, 0.1, 0.1, 0.1, 0.1, // subdet for TIB+
    0.001, 0.001, 0.1, 0.1, 0.1, 0.1, // subdet for TIB-
    0.001, 0.001, 0.1, 0.1, 0.1, 0.1, // subdet for TOB+
    0.001, 0.001, 0.1, 0.1, 0.1, 0.1, // subdet for TOB-
    0.001, 0.001, 0.1, 0.1, 0.1, 0.1, // subdet for TEC+
    0.001, 0.001, 0.1, 0.1, 0.1, 0.1, // subdet for TEC-
    0.001, 0.001, 0.001, 0.001,  0.001, 0.001,  0.001, 0.001, // beams 0-3
    0.001, 0.001, 0.001, 0.001,  0.001, 0.001,  0.001, 0.001  // beams 4-7
  };


  // subdetector parameters for TIB+:

  // rotation around z of first end face 
  minuit->mnparm(  0, "subRot1TIB+",      _vstart[0],  _vstep[0],  0, 0, _ierflg );
  // rotation around z of second end face
  minuit->mnparm(  1, "subRot2TIB+",      _vstart[1],  _vstep[1],  0, 0, _ierflg );
  // translation along x of first end face
  minuit->mnparm(  2, "subTransX1TIB+",   _vstart[2],  _vstep[2],  0, 0, _ierflg );
  // translation along x of second end face
  minuit->mnparm(  3, "subTransX2TIB+",   _vstart[3],  _vstep[3],  0, 0, _ierflg );
  // translation along y of first end face
  minuit->mnparm(  4, "subTransY1TIB+",   _vstart[4],  _vstep[4],  0, 0, _ierflg );
  // translation along y of second  end face
  minuit->mnparm(  5, "subTransY2TIB+",   _vstart[5],  _vstep[5],  0, 0, _ierflg );

  // subdetector parameters for TIB-:

  // rotation around z of first end face 
  minuit->mnparm(  6, "subRot1TIB-",      _vstart[6],  _vstep[6],  0, 0, _ierflg );
  // rotation around z of second end face
  minuit->mnparm(  7, "subRot2TIB-",      _vstart[7],  _vstep[7],  0, 0, _ierflg );
  // translation along x of first end face
  minuit->mnparm(  8, "subTransX1TIB-",   _vstart[8],  _vstep[8],  0, 0, _ierflg );
  // translation along x of second end face
  minuit->mnparm(  9, "subTransX2TIB-",   _vstart[9],  _vstep[9],  0, 0, _ierflg );
  // translation along y of first end face
  minuit->mnparm( 10, "subTransY1TIB-",   _vstart[10], _vstep[10], 0, 0, _ierflg );
  // translation along y of second  end face
  minuit->mnparm( 11, "subTransY2TIB-",   _vstart[11], _vstep[11], 0, 0, _ierflg );

  // subdetector parameters for TOB+:

  // rotation around z of first end face 
  minuit->mnparm( 12, "subRot1TOB+",      _vstart[12], _vstep[12], 0, 0, _ierflg );
  // rotation around z of second end face
  minuit->mnparm( 13, "subRot2TOB+",      _vstart[13], _vstep[13], 0, 0, _ierflg );
  // translation along x of first end face
  minuit->mnparm( 14, "subTransX1TOB+",   _vstart[14], _vstep[14], 0, 0, _ierflg );
  // translation along x of second end face
  minuit->mnparm( 15, "subTransX2TOB+",   _vstart[15], _vstep[15], 0, 0, _ierflg );
  // translation along y of first end face
  minuit->mnparm( 16, "subTransY1TOB+",   _vstart[16], _vstep[16], 0, 0, _ierflg );
  // translation along y of second  end face
  minuit->mnparm( 17, "subTransY2TOB+",   _vstart[17], _vstep[17], 0, 0, _ierflg );

  // subdetector parameters for TOB-:

  // rotation around z of first end face 
  minuit->mnparm( 18, "subRot1TOB-",      _vstart[18], _vstep[18], 0, 0, _ierflg );
  // rotation around z of second end face
  minuit->mnparm( 19, "subRot2TOB-",      _vstart[19], _vstep[19], 0, 0, _ierflg );
  // translation along x of first end face
  minuit->mnparm( 20, "subTransX1TOB-",   _vstart[20], _vstep[20], 0, 0, _ierflg );
  // translation along x of second end face
  minuit->mnparm( 21, "subTransX2TOB-",   _vstart[21], _vstep[21], 0, 0, _ierflg );
  // translation along y of first end face
  minuit->mnparm( 22, "subTransY1TOB-",   _vstart[22], _vstep[22], 0, 0, _ierflg );
  // translation along y of second  end face
  minuit->mnparm( 23, "subTransY2TOB-",   _vstart[23], _vstep[23], 0, 0, _ierflg );

  // subdetector parameters for TEC+:

  // rotation around z of first end face 
  minuit->mnparm( 24, "subRot1TEC+",      _vstart[24], _vstep[24], 0, 0, _ierflg );
  // rotation around z of second end face
  minuit->mnparm( 25, "subRot2TEC+",      _vstart[25], _vstep[25], 0, 0, _ierflg );
  // translation along x of first end face
  minuit->mnparm( 26, "subTransX1TEC+",   _vstart[26], _vstep[26], 0, 0, _ierflg );
  // translation along x of second end face
  minuit->mnparm( 27, "subTransX2TEC+",   _vstart[27], _vstep[27], 0, 0, _ierflg );
  // translation along y of first end face
  minuit->mnparm( 28, "subTransY1TEC+",   _vstart[28], _vstep[28], 0, 0, _ierflg );
  // translation along y of second  end face
  minuit->mnparm( 29, "subTransY2TEC+",   _vstart[29], _vstep[29], 0, 0, _ierflg );

  // subdetector parameters for TEC-:

  // rotation around z of first end face 
  minuit->mnparm( 30, "subRot1TEC-",      _vstart[30], _vstep[30], 0, 0, _ierflg );
  // rotation around z of second end face
  minuit->mnparm( 31, "subRot2TEC-",      _vstart[31], _vstep[31], 0, 0, _ierflg );
  // translation along x of first end face
  minuit->mnparm( 32, "subTransX1TEC-",   _vstart[32], _vstep[32], 0, 0, _ierflg );
  // translation along x of second end face
  minuit->mnparm( 33, "subTransX2TEC-",   _vstart[33], _vstep[33], 0, 0, _ierflg );
  // translation along y of first end face
  minuit->mnparm( 34, "subTransY1TEC-",   _vstart[34], _vstep[34], 0, 0, _ierflg );
  // translation along y of second  end face
  minuit->mnparm( 35, "subTransY2TEC-",   _vstart[35], _vstep[35], 0, 0, _ierflg );


  // beam parameters (+-z pairs, duplicated for beams 0-7):

  // rotation around z at zt1
  minuit->mnparm( 36, "beamRot1Beam0",    _vstart[36],  _vstep[36], 0, 0, _ierflg );
  // rotation around z at zt2
  minuit->mnparm( 37, "beamRot2Beam0",    _vstart[37],  _vstep[37], 0, 0, _ierflg );
  
  // rotation around z at zt1
  minuit->mnparm( 38, "beamRot1Beam1",    _vstart[38],  _vstep[38], 0, 0, _ierflg );
  // rotation around z at zt2
  minuit->mnparm( 39, "beamRot2Beam1",    _vstart[39],  _vstep[39], 0, 0, _ierflg );

  // rotation around z at zt1
  minuit->mnparm( 40, "beamRot1Beam2",    _vstart[40],  _vstep[40], 0, 0, _ierflg );
  // rotation around z at zt2
  minuit->mnparm( 41, "beamRot2Beam2",    _vstart[41],  _vstep[41], 0, 0, _ierflg );

  // rotation around z at zt1
  minuit->mnparm( 42, "beamRot1Beam3",    _vstart[42],  _vstep[42], 0, 0, _ierflg );
  // rotation around z at zt2
  minuit->mnparm( 43, "beamRot2Beam3",    _vstart[43],  _vstep[43], 0, 0, _ierflg );

  // rotation around z at zt1
  minuit->mnparm( 44, "beamRot1Beam4",    _vstart[44],  _vstep[44], 0, 0, _ierflg );
  // rotation around z at zt2
  minuit->mnparm( 45, "beamRot2Beam4",    _vstart[45],  _vstep[45], 0, 0, _ierflg );
  
  // rotation around z at zt1
  minuit->mnparm( 46, "beamRot1Beam5",    _vstart[46],  _vstep[46], 0, 0, _ierflg );
  // rotation around z at zt2
  minuit->mnparm( 47, "beamRot2Beam5",    _vstart[47],  _vstep[47], 0, 0, _ierflg );

  // rotation around z at zt1
  minuit->mnparm( 48, "beamRot1Beam6",    _vstart[48],  _vstep[48], 0, 0, _ierflg );
  // rotation around z at zt2
  minuit->mnparm( 49, "beamRot2Beam6",    _vstart[49],  _vstep[49], 0, 0, _ierflg );

  // rotation around z at zt1
  minuit->mnparm( 50, "beamRot1Beam7",    _vstart[50],  _vstep[50], 0, 0, _ierflg );
  // rotation around z at zt2
  minuit->mnparm( 51, "beamRot2Beam7",    _vstart[51],  _vstep[51], 0, 0, _ierflg );


  // we fix the respective outer disks 9 of each endcap
  // as a reference system (pars 25,27,29 & 30,32,34)
  // note: minuit numbering is fortran style...
  arglist[0] = 26; arglist[1] = 28; arglist[2] = 30;
  //  minuit->mnexcm( "FIX", arglist ,3, _ierflg ); // TEC+
  arglist[0] = 31; arglist[1] = 33; arglist[2] = 35;
  //  minuit->mnexcm( "FIX", arglist ,3, _ierflg ); // TEC-




  // DEBUG: FIX BEAM PARAMETERS /////////////////////////////////////////////////////////////////////
    double parlist[16];
    for( int par = 37; par <= 52; ++par ) parlist[par-37] = par;
    minuit->mnexcm( "FIX", parlist ,16, _ierflg );

  // DEBUG: FIX ALGN PARAMETERS /////////////////////////////////////////////////////////////////////
//   double parlist[36];
//   for( int par = 1; par <= 36; ++par ) parlist[par-1] = par;
//   minuit->mnexcm( "FIX", parlist ,36, _ierflg );



  // now ready for minimization step
  arglist[0] = 10000;
  arglist[1] = 0.1;
  minuit->mnexcm( "MIGRAD", arglist , 2, _ierflg ); // minimizer
  //  minuit->mnexcm( "MINOS", arglist , 1, _ierflg ); // error recalculation

  // now fill the result vector.
  // turned out that the parameter numbering is stupid, change this later..
  LASBarrelAlignmentParameterSet theResult;
  double par = 0., parError = 0.;

  // TEC+ rot
  minuit->GetParameter( 24, par, parError ); theResult.GetParameter( 0, 0, 0 ).first = par; theResult.GetParameter( 0, 0, 0 ).second = parError;
  minuit->GetParameter( 25, par, parError ); theResult.GetParameter( 0, 1, 0 ).first = par; theResult.GetParameter( 0, 1, 0 ).second = parError;
  // TEC+ x
  minuit->GetParameter( 26, par, parError ); theResult.GetParameter( 0, 0, 1 ).first = par; theResult.GetParameter( 0, 0, 1 ).second = parError;
  minuit->GetParameter( 27, par, parError ); theResult.GetParameter( 0, 1, 1 ).first = par; theResult.GetParameter( 0, 1, 1 ).second = parError;
  // TEC+ x
  minuit->GetParameter( 28, par, parError ); theResult.GetParameter( 0, 0, 2 ).first = par; theResult.GetParameter( 0, 0, 2 ).second = parError;
  minuit->GetParameter( 29, par, parError ); theResult.GetParameter( 0, 1, 2 ).first = par; theResult.GetParameter( 0, 1, 2 ).second = parError;

  // TEC- rot
  minuit->GetParameter( 30, par, parError ); theResult.GetParameter( 1, 0, 0 ).first = par; theResult.GetParameter( 1, 0, 0 ).second = parError;
  minuit->GetParameter( 31, par, parError ); theResult.GetParameter( 1, 1, 0 ).first = par; theResult.GetParameter( 1, 1, 0 ).second = parError;
  // TEC- x
  minuit->GetParameter( 32, par, parError ); theResult.GetParameter( 1, 0, 1 ).first = par; theResult.GetParameter( 1, 0, 1 ).second = parError;
  minuit->GetParameter( 33, par, parError ); theResult.GetParameter( 1, 1, 1 ).first = par; theResult.GetParameter( 1, 1, 1 ).second = parError;
  // TEC- x
  minuit->GetParameter( 34, par, parError ); theResult.GetParameter( 1, 0, 2 ).first = par; theResult.GetParameter( 1, 0, 2 ).second = parError;
  minuit->GetParameter( 35, par, parError ); theResult.GetParameter( 1, 1, 2 ).first = par; theResult.GetParameter( 1, 1, 2 ).second = parError;

  // TIB+ rot
  minuit->GetParameter(  0, par, parError ); theResult.GetParameter( 2, 0, 0 ).first = par; theResult.GetParameter( 2, 0, 0 ).second = parError;
  minuit->GetParameter(  1, par, parError ); theResult.GetParameter( 2, 1, 0 ).first = par; theResult.GetParameter( 2, 1, 0 ).second = parError;
  // TIB+ x
  minuit->GetParameter(  2, par, parError ); theResult.GetParameter( 2, 0, 1 ).first = par; theResult.GetParameter( 2, 0, 1 ).second = parError;
  minuit->GetParameter(  3, par, parError ); theResult.GetParameter( 2, 1, 1 ).first = par; theResult.GetParameter( 2, 1, 1 ).second = parError;
  // TIB+ x
  minuit->GetParameter(  4, par, parError ); theResult.GetParameter( 2, 0, 2 ).first = par; theResult.GetParameter( 2, 0, 2 ).second = parError;
  minuit->GetParameter(  5, par, parError ); theResult.GetParameter( 2, 1, 2 ).first = par; theResult.GetParameter( 2, 1, 2 ).second = parError;

  // TIB- rot
  minuit->GetParameter(  6, par, parError ); theResult.GetParameter( 3, 0, 0 ).first = par; theResult.GetParameter( 3, 0, 0 ).second = parError;
  minuit->GetParameter(  7, par, parError ); theResult.GetParameter( 3, 1, 0 ).first = par; theResult.GetParameter( 3, 1, 0 ).second = parError;
  // TIB- x
  minuit->GetParameter(  8, par, parError ); theResult.GetParameter( 3, 0, 1 ).first = par; theResult.GetParameter( 3, 0, 1 ).second = parError;
  minuit->GetParameter(  9, par, parError ); theResult.GetParameter( 3, 1, 1 ).first = par; theResult.GetParameter( 3, 1, 1 ).second = parError;
  // TIB- x
  minuit->GetParameter( 10, par, parError ); theResult.GetParameter( 3, 0, 2 ).first = par; theResult.GetParameter( 3, 0, 2 ).second = parError;
  minuit->GetParameter( 11, par, parError ); theResult.GetParameter( 3, 1, 2 ).first = par; theResult.GetParameter( 3, 1, 2 ).second = parError;

  // TOB+ rot
  minuit->GetParameter( 12, par, parError ); theResult.GetParameter( 4, 0, 0 ).first = par; theResult.GetParameter( 4, 0, 0 ).second = parError;
  minuit->GetParameter( 13, par, parError ); theResult.GetParameter( 4, 1, 0 ).first = par; theResult.GetParameter( 4, 1, 0 ).second = parError;
  // TOB+ x
  minuit->GetParameter( 14, par, parError ); theResult.GetParameter( 4, 0, 1 ).first = par; theResult.GetParameter( 4, 0, 1 ).second = parError;
  minuit->GetParameter( 15, par, parError ); theResult.GetParameter( 4, 1, 1 ).first = par; theResult.GetParameter( 4, 1, 1 ).second = parError;
  // TOB+ x
  minuit->GetParameter( 16, par, parError ); theResult.GetParameter( 4, 0, 2 ).first = par; theResult.GetParameter( 4, 0, 2 ).second = parError;
  minuit->GetParameter( 17, par, parError ); theResult.GetParameter( 4, 1, 2 ).first = par; theResult.GetParameter( 4, 1, 2 ).second = parError;

  // TOB- rot
  minuit->GetParameter( 18, par, parError ); theResult.GetParameter( 5, 0, 0 ).first = par; theResult.GetParameter( 5, 0, 0 ).second = parError;
  minuit->GetParameter( 19, par, parError ); theResult.GetParameter( 5, 1, 0 ).first = par; theResult.GetParameter( 5, 1, 0 ).second = parError;
  // TOB- x
  minuit->GetParameter( 20, par, parError ); theResult.GetParameter( 5, 0, 1 ).first = par; theResult.GetParameter( 5, 0, 1 ).second = parError;
  minuit->GetParameter( 21, par, parError ); theResult.GetParameter( 5, 1, 1 ).first = par; theResult.GetParameter( 5, 1, 1 ).second = parError;
  // TOB- x
  minuit->GetParameter( 22, par, parError ); theResult.GetParameter( 5, 0, 2 ).first = par; theResult.GetParameter( 5, 0, 2 ).second = parError;
  minuit->GetParameter( 23, par, parError ); theResult.GetParameter( 5, 1, 2 ).first = par; theResult.GetParameter( 5, 1, 2 ).second = parError;

  std::cout << " [LASBarrelAlgorithm::CalculateParameters] -- Done." << std::endl;

  return theResult;

}





void fcn( int &npar, double *gin, double &f, double *par, int iflag )  {

  double chisquare = 0.;

  // the loop object and its variables
  LASGlobalLoop moduleLoop;
  int det, beam, pos, disk;

  // ADJUST THIS ALSO IN LASGeometryUpdater

  // the z positions of the halfbarrel_end_faces / outer_TEC_disks (in mm);
  // parameters are: det, side(0=+/1=-), z(lower/upper). TECs have no side (use side = 0)
  std::vector<std::vector<std::vector<double> > > endFaceZPositions( 4, std::vector<std::vector<double> >( 2, std::vector<double>( 2, 0. ) ) );
  endFaceZPositions.at( 0 ).at( 0 ).at( 0 ) = 1322.5;  // TEC+, *, disk1 ///
  endFaceZPositions.at( 0 ).at( 0 ).at( 1 ) = 2667.5;  // TEC+, *, disk9 /// SIDE INFORMATION
  endFaceZPositions.at( 1 ).at( 0 ).at( 0 ) = -2667; // TEC-, *, disk1 /// MEANINGLESS FOR TEC -> USE .at(0)!
  endFaceZPositions.at( 1 ).at( 0 ).at( 1 ) = -1322.5; // TEC-, *, disk9 ///
  endFaceZPositions.at( 2 ).at( 1 ).at( 0 ) = -700.;  // TIB,  -, small z
  endFaceZPositions.at( 2 ).at( 1 ).at( 1 ) = -300.;  // TIB,  -, large z
  endFaceZPositions.at( 2 ).at( 0 ).at( 0 ) = 300.;   // TIB,  +, small z
  endFaceZPositions.at( 2 ).at( 0 ).at( 1 ) = 700.;   // TIB,  +, large z
  endFaceZPositions.at( 3 ).at( 1 ).at( 0 ) = -1090.; // TOB,  -, small z
  endFaceZPositions.at( 3 ).at( 1 ).at( 1 ) = -300.;  // TOB,  -, large z
  endFaceZPositions.at( 3 ).at( 0 ).at( 0 ) = 300.;   // TOB,  +, small z
  endFaceZPositions.at( 3 ).at( 0 ).at( 1 ) = 1090.;  // TOB,  +, large z

  // the z positions of the virtual planes at which the beam parameters are measured
  std::vector<double> disk9EndFaceZPositions( 2, 0. );
  disk9EndFaceZPositions.at( 0 ) = -2667.5; // TEC- disk9
  disk9EndFaceZPositions.at( 1 ) =  2667.5; // TEC+ disk9
  
  // reduced z positions of the beam spots ( z'_{k,j}, z"_{k,j} )
  double detReducedZ[2] = { 0., 0. };
  // reduced beam splitter positions ( zt'_{k,j}, zt"_{k,j} )
  double beamReducedZ[2] = { 0., 0. };

  // calculate residual for TIBTOB
  det = 2; beam = 0; pos = 0;
  do {

    // define the side: 0 for TIB+/TOB+ and 1 for TIB-/TOB-
    const int theSide = pos<3 ? 0 : 1;

    // this is the path the beam has to travel radially after being reflected 
    // by the AT mirrors (TIB:50mm, TOB:36mm) -> used for beam parameters
    const double radialOffset = det==2 ? 50. : 36.;

    // reduced module's z position with respect to the subdetector endfaces
    detReducedZ[0] = aMeasuredCoordinates->GetTIBTOBEntry( det, beam, pos ).GetZ() - endFaceZPositions.at( det ).at( theSide ).at( 0 );
    detReducedZ[0] /= ( endFaceZPositions.at( det ).at( theSide ).at( 1 ) - endFaceZPositions.at( det ).at( theSide ).at( 0 ) );
    detReducedZ[1] = endFaceZPositions.at( det ).at( theSide ).at( 1 ) - aMeasuredCoordinates->GetTIBTOBEntry( det, beam, pos ).GetZ();
    detReducedZ[1] /= ( endFaceZPositions.at( det ).at( theSide ).at( 1 ) - endFaceZPositions.at( det ).at( theSide ).at( 0 ) );

    // reduced module's z position with respect to the tec disks +-9 (for the beam parameters)
    beamReducedZ[0] = ( aMeasuredCoordinates->GetTIBTOBEntry( det, beam, pos ).GetZ() - radialOffset ) - disk9EndFaceZPositions.at( 0 );
    beamReducedZ[0] /= ( disk9EndFaceZPositions.at( 1 ) - disk9EndFaceZPositions.at( 0 ) );
    beamReducedZ[1] = disk9EndFaceZPositions.at( 1 ) - ( aMeasuredCoordinates->GetTIBTOBEntry( det, beam, pos ).GetZ() - radialOffset );
    beamReducedZ[1] /= ( disk9EndFaceZPositions.at( 1 ) - disk9EndFaceZPositions.at( 0 ) );


    // phi residual for this module as measured
    const double measuredResidual = aMeasuredCoordinates->GetTIBTOBEntry( det, beam, pos ).GetPhi() - //&
      aNominalCoordinates->GetTIBTOBEntry( det, beam, pos ).GetPhi();

    // shortcuts for speed
    const double currentPhi = aNominalCoordinates->GetTIBTOBEntry( det, beam, pos ).GetPhi();
    const double currentR   = aNominalCoordinates->GetTIBTOBEntry( det, beam, pos ).GetR();

    // phi residual for this module calculated from the parameters and nominal coordinates:
    // this is the sum over the contributions from all parameters
    double calculatedResidual = 0.;

    // note that the contributions ym_{i,j,k} given in the tables in TkLasATModel TWiki
    // are defined as R*phi, so here they are divided by the R_j factors (we minimize delta phi)

    // unfortunately, minuit keeps parameters in a 1-dim array,
    // so we need to address the correct par[] for the 4 cases TIB+/TIB-/TOB+/TOB-
    int indexBase = 0;
    if( det == 2 ) { // TIB
      if( theSide == 0 ) indexBase = 0; // TIB+
      if( theSide == 1 ) indexBase = 6; // TIB-
    }
    if( det == 3 ) { // TOB
      if( theSide == 0 ) indexBase = 12; // TOB+
      if( theSide == 1 ) indexBase = 18; // TOB-
    }

    // par[0] ("subRot1"): rotation around z of first end face
    calculatedResidual += detReducedZ[1] * par[indexBase+0];
    
    // par[1] ("subRot2"): rotation around z of second end face
    calculatedResidual += detReducedZ[0] * par[indexBase+1];
    
    // par[2] ("subTransX1"): translation along x of first end face
    calculatedResidual += detReducedZ[1] * sin( currentPhi ) / currentR * par[indexBase+2];

    // par[3] ("subTransX2"): translation along x of second end face
    calculatedResidual += detReducedZ[0] * sin( currentPhi ) / currentR * par[indexBase+3];

    // par[4] ("subTransY1"): translation along y of first end face
    calculatedResidual += -1. * detReducedZ[1] * cos( currentPhi ) / currentR * par[indexBase+4];

    // par[5] ("subTransY2"): translation along y of second end face
    calculatedResidual += -1. * detReducedZ[0] * cos( currentPhi ) / currentR * par[indexBase+5];


    // now come the 8*2 beam parameters, calculate the respective parameter index base first (-> which beam)
    indexBase = 36 + beam * 2;

    // (there's no TIB/TOB/+/- distinction here for the beams)

    // ("beamRot1"): rotation around z at zt1
    calculatedResidual += beamReducedZ[1] * par[indexBase];

    // ("beamRot2"): rotation around z at zt2
    calculatedResidual += beamReducedZ[0] * par[indexBase+1];
 

    // now calculate the chisquare
    chisquare += pow( measuredResidual - calculatedResidual, 2 ) / pow( aMeasuredCoordinates->GetTIBTOBEntry( det, beam, pos ).GetPhiError(), 2 );

  } while( moduleLoop.TIBTOBLoop( det, beam, pos ) );

 



  // calculate residual for TEC AT
  det = 0; beam = 0; disk = 0;
  do {
    
    // define the side: TECs sides already disentangled by the "det" index, so fix this to zero
    const int theSide = 0;
    
    // reduced module's z position with respect to the subdetector endfaces
    detReducedZ[0] = aMeasuredCoordinates->GetTEC2TECEntry( det, beam, disk ).GetZ() - endFaceZPositions.at( det ).at( theSide ).at( 0 );
    detReducedZ[0] /= ( endFaceZPositions.at( det ).at( theSide ).at( 1 ) - endFaceZPositions.at( det ).at( theSide ).at( 0 ) );
    detReducedZ[1] = endFaceZPositions.at( det ).at( theSide ).at( 1 ) - aMeasuredCoordinates->GetTEC2TECEntry( det, beam, disk ).GetZ();
    detReducedZ[1] /= ( endFaceZPositions.at( det ).at( theSide ).at( 1 ) - endFaceZPositions.at( det ).at( theSide ).at( 0 ) );

    // reduced module's z position with respect to the tec disks +-9 (for the beam parameters)
    beamReducedZ[0] = aMeasuredCoordinates->GetTEC2TECEntry( det, beam, disk ).GetZ() - disk9EndFaceZPositions.at( 0 );
    beamReducedZ[0] /= ( disk9EndFaceZPositions.at( 1 ) - disk9EndFaceZPositions.at( 0 ) );
    beamReducedZ[1] = disk9EndFaceZPositions.at( 1 ) - aMeasuredCoordinates->GetTEC2TECEntry( det, beam, disk ).GetZ();
    beamReducedZ[1] /= ( disk9EndFaceZPositions.at( 1 ) - disk9EndFaceZPositions.at( 0 ) );

    // phi residual for this module as measured
    const double measuredResidual = aMeasuredCoordinates->GetTEC2TECEntry( det, beam, disk ).GetPhi() - //&
      aNominalCoordinates->GetTEC2TECEntry( det, beam, disk ).GetPhi();

    // shortcuts for speed
    const double currentPhi = aNominalCoordinates->GetTEC2TECEntry( det, beam, disk ).GetPhi();
    const double currentR   = aNominalCoordinates->GetTEC2TECEntry( det, beam, disk ).GetR();

    // phi residual for this module calculated from the parameters and nominal coordinates:
    // this is the sum over the contributions from all parameters
    double calculatedResidual = 0.;

    // note that the contributions ym_{i,j,k} given in the tables in TkLasATModel TWiki
    // are defined as R*phi, so here they are divided by the R_j factors (we minimize delta phi)

    // there's also a distinction between TEC+/- parameters in situ (det==0 ? <TEC+> : <TEC->)

    // par[0] ("subRot1"): rotation around z of first end face
    calculatedResidual += detReducedZ[1] * (det==0 ? par[24] : par[30]);
    
    // par[1] ("subRot2"): rotation around z of second end face
    calculatedResidual += detReducedZ[0] * (det==0 ? par[25] : par[31]);
    
    // par[2] ("subTransX1"): translation along x of first end face
    calculatedResidual += detReducedZ[1] * sin( currentPhi ) * (det==0 ? par[26] : par[32]) / currentR;

    // par[3] ("subTransX2"): translation along x of second end face
    calculatedResidual += detReducedZ[0] * sin( currentPhi ) * (det==0 ? par[27] : par[33]) / currentR;

    // par[4] ("subTransY1"): translation along y of first end face
    calculatedResidual += -1. * detReducedZ[1] * cos( currentPhi ) * (det==0 ? par[28] : par[34]) / currentR;

    // par[5] ("subTransY2"): translation along y of second end face
    calculatedResidual += -1. * detReducedZ[0] * cos( currentPhi ) * (det==0 ? par[29] : par[35]) / currentR;

    // now come the 8*2 beam parameters; calculate the respective parameter index base first (-> which beam)
    const unsigned int indexBase = 36 + beam * 2;

    // there's no TEC+/- distinction here

    // par[6] ("beamRot1"): rotation around z at zt1
    calculatedResidual += beamReducedZ[1] * par[indexBase];

    // par[7] ("beamRot2"): rotation around z at zt2
    calculatedResidual += beamReducedZ[0] * par[indexBase+1];
 

    // now calculate the chisquare 
    // TODO: check for phi != 0 !!!
    chisquare += pow( measuredResidual - calculatedResidual, 2 ) / pow( aMeasuredCoordinates->GetTEC2TECEntry( det, beam, disk ).GetPhiError(), 2 );

  } while( moduleLoop.TEC2TECLoop( det, beam, disk ) );



  // return the chisquare by ref
  f = chisquare;
  
}




void LASBarrelAlgorithm::Dump( void ) {
  
  if( !minuit ) {
    std::cerr << " [LASBarrelAlgorithm::Dump] ** WARNING: minimizer object uninitialized." << std::endl;
    return;
  }

  std::cout << std::endl << " [LASBarrelAlgorithm::Dump] -- Parameter dump: " << std::endl;

  const int subdetParMap[6] = { 24, 30, 0, 6, 12, 18 }; // map to one-dim array
  const std::string subdetNames[6] = { " TEC+  ", " TEC-  ", " TIB+  ", " TIB-  ", " TOB+  ", " TOB-  " };
  double value, error;

  std::cout << " Detector parameters: " << std::endl;
  std::cout << " -------------------" << std::endl;
  std::cout << " Values:     PHI1         X1          Y1         PHI2         X2          Y2   " << std::endl;
  for( int subdet = 0; subdet < 6; ++subdet ) {
    std::cout <<subdetNames[subdet];
    for( int par = subdetParMap[subdet]; par <= subdetParMap[subdet] + 4; par += 2 ) {
      minuit->GetParameter( par, value, error );
      std::cout << std::setw( 12 ) << std::setprecision( 6 ) << std::fixed << value;
    }
    for( int par = subdetParMap[subdet] + 1; par <= subdetParMap[subdet] + 5; par += 2 ) {
      minuit->GetParameter( par, value, error );
      std::cout << std::setw( 12 ) << std::setprecision( 6 ) << std::fixed << value;
    }
    std::cout << std::endl;
  }

  std::cout << " Errors:     PHI1         X1          Y1         PHI2         X2          Y2   " << std::endl;
  for( int subdet = 0; subdet < 6; ++subdet ) {
    std::cout <<subdetNames[subdet];
    for( int par = subdetParMap[subdet]; par <= subdetParMap[subdet] + 4; par += 2 ) {
      minuit->GetParameter( par, value, error );
      std::cout << std::setw( 12 ) << std::setprecision( 6 ) << std::fixed << error;
    }
    for( int par = subdetParMap[subdet] + 1; par <= subdetParMap[subdet] + 5; par += 2 ) {
      minuit->GetParameter( par, value, error );
      std::cout << std::setw( 12 ) << std::setprecision( 6 ) << std::fixed << error;
    }
    std::cout << std::endl;
  }

  std::cout << std::endl;
  std::cout << " Beam parameters: " << std::endl;
  std::cout << " ---------------" << std::endl;
  std::cout << " Values:  PHI1        PHI2" << std::endl;
  for( int beam = 0; beam < 8; ++beam ) {
    std::cout << " " << beam << "  ";
    for( int z = 0; z < 2; ++z ) {
      minuit->GetParameter( 36 + 2 * beam + z, value, error );
      std::cout << std::setw( 12 ) << std::setprecision( 6 ) << std::fixed << value;
    }
    std::cout << std::endl;
  }  

  std::cout << " Errors:  PHI1        PHI2" << std::endl;
  for( int beam = 0; beam < 8; ++beam ) {
    std::cout << " " << beam << "  ";
    for( int z = 0; z < 2; ++z ) {
      minuit->GetParameter( 36 + 2 * beam + z, value, error );
      std::cout << std::setw( 12 ) << std::setprecision( 6 ) << std::fixed << error;
    }
    std::cout << std::endl;
  }



  // det parameters once again without leading column (for easy read-in), into a file
  ofstream file( "/afs/cern.ch/user/o/olzem/public/parameters_det.txt" );
  for( int subdet = 0; subdet < 6; ++subdet ) {
    for( int par = subdetParMap[subdet]; par <= subdetParMap[subdet] + 4; par += 2 ) {
      minuit->GetParameter( par, value, error );
      file << std::setw( 12 ) << std::setprecision( 6 ) << std::fixed << value;
    }
    for( int par = subdetParMap[subdet] + 1; par <= subdetParMap[subdet] + 5; par += 2 ) {
      minuit->GetParameter( par, value, error );
      file << std::setw( 12 ) << std::setprecision( 6 ) << std::fixed << value;
    }
    file << std::endl;
  }
  file.close();

  // same for beam parameters
  file.open( "/afs/cern.ch/user/o/olzem/public/parameters_beam.txt" );
  for( int beam = 0; beam < 8; ++beam ) {
    for( int z = 0; z < 2; ++z ) {
      minuit->GetParameter( 36 + 2 * beam + z, value, error );
      file << std::setw( 12 ) << std::setprecision( 6 ) << std::fixed << value;
    }
    file << std::endl;
  }  
  file.close();


  std:: cout << " [LASBarrelAlgorithm::Dump] -- End parameter dump." << std::endl;
  std::cout << std::endl;

}





void LASBarrelAlgorithm::ReadMisalignmentFromFile( const char* filename, 
                                                   LASGlobalData<LASCoordinateSet>& measuredCoordinates,
                                                   LASGlobalData<LASCoordinateSet>& nominalCoordinates  ) {

  ifstream file( filename );
  if( file.bad() ) {
    std::cerr << " [LASBarrelAlgorithm::ReadMisalignmentFromFile] ** ERROR: cannot open file \"" << filename << "\"." << std::endl;
    return;
  }

  std::cerr << " @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@" << std::endl;
  std::cerr << " @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@" << std::endl;
  std::cerr << " [LASBarrelAlgorithm::ReadMisalignmentFromFile] ** WARNING: you are reading a fake measurement from a file!" << std::endl;
  std::cerr << " @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@" << std::endl;
  std::cerr << " @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@" << std::endl;


  // the measured coordinates will finally be overwritten;
  // first, set them to the nominal values
  measuredCoordinates = nominalCoordinates;

  // and put large errors on all values;
  {
    LASGlobalLoop moduleLoop;
    int det, ring, beam, disk, pos;
    
    det = 0; ring = 0; beam = 0; disk = 0;
    do {
      measuredCoordinates.GetTECEntry( det, ring, beam, disk ).SetPhiError( 1000. );
    } while( moduleLoop.TECLoop( det, ring, beam, disk ) );
    
    det = 2; beam = 0; pos = 0;
    do {
      measuredCoordinates.GetTIBTOBEntry( det, beam, pos ).SetPhiError( 1000. );
    } while( moduleLoop.TIBTOBLoop( det, beam, pos  ) );
    
    det = 0; beam = 0; disk = 0;
    do {
      measuredCoordinates.GetTEC2TECEntry( det, beam, disk ).SetPhiError( 1000. );
    } while( moduleLoop.TEC2TECLoop( det, beam, disk ) );
  }


  // buffers for read-in
  int det, beam, z, ring;
  double phi, phiError;

  while( !file.eof() ) {

    file >> det;
    if( file.eof() ) break; // do not read the last line twice, do not fill trash if file empty

    file >> beam; file >> z; file >> ring;
    file >> phi; file >> phiError;

    if( det > 1 ) { // TIB/TOB
      measuredCoordinates.GetTIBTOBEntry( det, beam, z ).SetPhi( phi );
      measuredCoordinates.GetTIBTOBEntry( det, beam, z ).SetPhiError( phiError );
    } else { // TEC or TEC(at)
      if( ring > -1 ) { // TEC
        measuredCoordinates.GetTECEntry( det, ring, beam, z ).SetPhi( phi );
        measuredCoordinates.GetTECEntry( det, ring, beam, z ).SetPhiError( phiError );
      }
      else { // TEC(at)
        measuredCoordinates.GetTEC2TECEntry( det, beam, z ).SetPhi( phi );
        measuredCoordinates.GetTEC2TECEntry( det, beam, z ).SetPhiError( phiError );
      }
    }

  }
  
  file.close();

}





void LASBarrelAlgorithm::ReadStartParametersFromFile( const char* filename, float values[52] ) {
  
  ifstream file( filename );
  if( file.bad() ) {
    std::cerr << " [LASBarrelAlgorithm::ReadStartParametersFromFile] ** ERROR: cannot open file \"" << filename << "\"." << std::endl;
    return;
  }

  std::cerr << " @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@" << std::endl;
  std::cerr << " @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@" << std::endl;
  std::cerr << " [LASBarrelAlgorithm::ReadStartParametersFrom File] ** WARNING: you are reading parameter start values from a file!" << std::endl;
  std::cerr << " @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@" << std::endl;
  std::cerr << " @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@" << std::endl;

  // map to the minuit par array
  const int subdetParMap[6] = { 24, 30, 0, 6, 12, 18 };
  
  for( int det = 0; det < 6; ++det ) {
    file >> values[subdetParMap[det]];   // phi1
    file >> values[subdetParMap[det]+2]; // x1
    file >> values[subdetParMap[det]+4]; // y1
    file >> values[subdetParMap[det]+1]; // phi2
    file >> values[subdetParMap[det]+3]; // x2
    file >> values[subdetParMap[det]+5]; // y2
  }
  
}