/data/doxygen/doxygen-1.7.3/gen/CMSSW_4_2_8/src/CalibCalorimetry/EcalLaserAnalyzer/plugins/EcalTestPulseAnalyzer.cc

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/* 
 *  $id: EcalTestPulseAnalyzer.cc,v 1.4 2007/08/30 17:06:41 ganzhur Exp $
 *
 *  \class EcalTestPulseAnalyzer
 *
 *  $Date: 2010/10/21 22:03:33 $
 *  primary author: Julie Malcles - CEA/Saclay
 *  author: Gautier Hamel De Monchenault - CEA/Saclay
 */
#include <TFile.h>
#include <TTree.h>

using namespace std;
#include "EcalTestPulseAnalyzer.h"

#include <sstream>
#include <iostream>
#include <iomanip>



#include <FWCore/MessageLogger/interface/MessageLogger.h>
#include <FWCore/Utilities/interface/Exception.h>

#include <FWCore/Framework/interface/Event.h>
#include <FWCore/Framework/interface/MakerMacros.h>
#include <FWCore/Framework/interface/ESHandle.h>
#include <FWCore/ParameterSet/interface/ParameterSet.h>
#include <FWCore/Framework/interface/EventSetup.h>

#include <DataFormats/EcalDigi/interface/EcalDigiCollections.h>
#include <DataFormats/EcalDetId/interface/EcalDetIdCollections.h>
#include <DataFormats/EcalRawData/interface/EcalRawDataCollections.h>

#include <Geometry/EcalMapping/interface/EcalElectronicsMapping.h>
#include <Geometry/EcalMapping/interface/EcalMappingRcd.h>
#include <DataFormats/EcalDetId/interface/EcalElectronicsId.h>

#include <CalibCalorimetry/EcalLaserAnalyzer/interface/TPNFit.h>
#include <CalibCalorimetry/EcalLaserAnalyzer/interface/TSFit.h>  
#include <CalibCalorimetry/EcalLaserAnalyzer/interface/TMom.h>  

#include <CalibCalorimetry/EcalLaserAnalyzer/interface/ME.h>
#include <CalibCalorimetry/EcalLaserAnalyzer/interface/MEGeom.h>

using namespace std;



//========================================================================
EcalTestPulseAnalyzer::EcalTestPulseAnalyzer(const edm::ParameterSet& iConfig)
  //========================================================================
  :
iEvent(0),

// framework parameters with default values

_nsamples(      iConfig.getUntrackedParameter< unsigned int >( "nSamples",       10 ) ),
_presample(     iConfig.getUntrackedParameter< unsigned int >( "nPresamples",     3 ) ),
_firstsample(   iConfig.getUntrackedParameter< unsigned int >( "firstSample",     1 ) ),
_lastsample(    iConfig.getUntrackedParameter< unsigned int >( "lastSample",      2 ) ), 
_samplemin(     iConfig.getUntrackedParameter< unsigned int >( "sampleMin",       3 ) ),
_samplemax(     iConfig.getUntrackedParameter< unsigned int >( "sampleMax",       9 ) ),
_nsamplesPN(    iConfig.getUntrackedParameter< unsigned int >( "nSamplesPN",     50 ) ), 
_presamplePN(   iConfig.getUntrackedParameter< unsigned int >( "nPresamplesPN",   6 ) ),
_firstsamplePN( iConfig.getUntrackedParameter< unsigned int >( "firstSamplePN",   7 ) ),
_lastsamplePN(  iConfig.getUntrackedParameter< unsigned int >( "lastSamplePN",    8 ) ),
_niter(         iConfig.getUntrackedParameter< unsigned int >( "nIter",           3 ) ),
_chi2max(       iConfig.getUntrackedParameter< double       >( "chi2Max",      10.0 ) ),
_timeofmax(     iConfig.getUntrackedParameter< double       >( "timeOfMax",     4.5 ) ),
_ecalPart(      iConfig.getUntrackedParameter< std::string  >( "ecalPart",     "EB" ) ),
_fedid(         iConfig.getUntrackedParameter< int          >( "fedID",        -999 ) ),
nCrys(                                                                         NCRYSEB),
nTT(                                                                             NTTEB),
nMod(                                                                           NMODEB),
nGainPN(                                                                       NGAINPN),
nGainAPD(                                                                     NGAINAPD),
towerID(-1), channelID(-1),runType(-1), runNum(0), fedID(-1), dccID(-1), side(-1), iZ(1),
phi(-1), eta(-1), event(0), apdAmpl(0),apdTime(0),pnAmpl(0),
pnID(-1), moduleID(-1), channelIteratorEE(0)


  //========================================================================

{

  //now do what ever initialization is needed

  resdir_                = iConfig.getUntrackedParameter<std::string>("resDir");

  digiCollection_        = iConfig.getParameter<std::string>("digiCollection");
  digiPNCollection_      = iConfig.getParameter<std::string>("digiPNCollection");
  digiProducer_          = iConfig.getParameter<std::string>("digiProducer");

  eventHeaderCollection_ = iConfig.getParameter<std::string>("eventHeaderCollection");
  eventHeaderProducer_   = iConfig.getParameter<std::string>("eventHeaderProducer");


  // Define geometrical constants 

  if (_ecalPart == "EB") {
    nCrys     = NCRYSEB;
    nTT       = NTTEB;
  } else {
    nCrys     = NCRYSEE;
    nTT       = NTTEE;
  }
  
  iZ        = 1;
  if(  _fedid <= 609 ) iZ=-1;
  
  dccMEM    = ME::memFromDcc(_fedid);
  modules   = ME::lmmodFromDcc(_fedid);
  nMod      = modules.size(); 

}


//========================================================================
EcalTestPulseAnalyzer::~EcalTestPulseAnalyzer(){
  //========================================================================

  // do anything here that needs to be done at desctruction time
  // (e.g. close files, deallocate resources etc.)

}



//========================================================================
void EcalTestPulseAnalyzer::beginJob() {
  //========================================================================

  // Define temporary file

  rootfile=resdir_;
  rootfile+="/TmpTreeTestPulseAnalyzer.root";

  outFile = new TFile(rootfile.c_str(),"RECREATE");
  
  for (unsigned int i=0;i<nCrys;i++){
    
    std::stringstream name;
    name << "Tree" <<i;
    
    trees[i]= new TTree(name.str().c_str(),name.str().c_str());
    
    //List of branches

    trees[i]->Branch( "iphi",      &phi,         "phi/I"         );
    trees[i]->Branch( "ieta",      &eta,         "eta/I"         );
    trees[i]->Branch( "side",      &side,        "side/I"        );
    trees[i]->Branch( "dccID",     &dccID,       "dccID/I"       );
    trees[i]->Branch( "towerID",   &towerID,     "towerID/I"     );
    trees[i]->Branch( "channelID", &channelID,   "channelID/I"   );
    trees[i]->Branch( "event",     &event,       "event/I"       );
    trees[i]->Branch( "apdGain",   &apdGain,     "apdGain/I"     );
    trees[i]->Branch( "pnGain",    &pnGain,      "pnGain/I"      );
    trees[i]->Branch( "apdAmpl",   &apdAmpl,     "apdAmpl/D"     );
    trees[i]->Branch( "pnAmpl0",   &pnAmpl0,     "pnAmpl0/D"     ); 
    trees[i]->Branch( "pnAmpl1",   &pnAmpl1,     "pnAmpl1/D"     ); 
  
    trees[i]->SetBranchAddress( "ieta",        &eta         );  
    trees[i]->SetBranchAddress( "iphi",        &phi         ); 
    trees[i]->SetBranchAddress( "side",        &side        ); 
    trees[i]->SetBranchAddress( "dccID",       &dccID       ); 
    trees[i]->SetBranchAddress( "towerID",     &towerID     ); 
    trees[i]->SetBranchAddress( "channelID",   &channelID   ); 
    trees[i]->SetBranchAddress( "event",       &event       );
    trees[i]->SetBranchAddress( "apdGain",     &apdGain     );
    trees[i]->SetBranchAddress( "pnGain",      &pnGain      );
    trees[i]->SetBranchAddress( "apdAmpl",     &apdAmpl     );
    trees[i]->SetBranchAddress( "pnAmpl0",     &pnAmpl0     );
    trees[i]->SetBranchAddress( "pnAmpl1",     &pnAmpl1     );

  }  
  
  // Initializations 

  for(unsigned int j=0;j<nCrys;j++){
    iEta[j]=-1;
    iPhi[j]=-1;
    iModule[j]=10;
    iTowerID[j]=-1;
    iChannelID[j]=-1;
    idccID[j]=-1;
    iside[j]=-1;
  }

  for(unsigned int j=0;j<nMod;j++){
    firstChanMod[j]=0;
    isFirstChanModFilled[j]=0;
  }

  // Define output results file name
  
  std::stringstream namefile;
  namefile << resdir_ <<"/APDPN_TESTPULSE.root";      
  resfile=namefile.str();

  // TP events counter
  TPEvents=0;
  
}


//========================================================================
void EcalTestPulseAnalyzer:: analyze( const edm::Event & e, const  edm::EventSetup& c){
  //========================================================================

  ++iEvent;

  // Retrieve DCC header
  edm::Handle<EcalRawDataCollection> pDCCHeader;
  const  EcalRawDataCollection* DCCHeader=0;
  try {
    e.getByLabel(eventHeaderProducer_,eventHeaderCollection_, pDCCHeader);
    DCCHeader=pDCCHeader.product();
  }catch ( std::exception& ex ) {
    std::cerr << "Error! can't get the product  retrieving DCC header" << eventHeaderCollection_.c_str() << std::endl;
  }
 

  // retrieving crystal EB data from Event
  edm::Handle<EBDigiCollection>  pEBDigi;
  const  EBDigiCollection* EBDigi=0;

  // retrieving crystal EE data from Event
  edm::Handle<EEDigiCollection>  pEEDigi;
  const  EEDigiCollection* EEDigi=0;

  if (_ecalPart == "EB") {
    try {
      e.getByLabel(digiProducer_,digiCollection_, pEBDigi); 
      EBDigi=pEBDigi.product(); 
    }catch ( std::exception& ex ) {
      std::cerr << "Error! can't get the product retrieving EB crystal data " << digiCollection_.c_str() << std::endl;
    } 
  } else {
    try {
      e.getByLabel(digiProducer_,digiCollection_, pEEDigi); 
      EEDigi=pEEDigi.product(); 
    }catch ( std::exception& ex ) {
      std::cerr << "Error! can't get the product retrieving EE crystal data " << digiCollection_.c_str() << std::endl;
    } 
  }


  // Retrieve crystal PN diodes from Event
  edm::Handle<EcalPnDiodeDigiCollection>  pPNDigi;
  const  EcalPnDiodeDigiCollection* PNDigi=0;
  try {
    e.getByLabel(digiProducer_,digiPNCollection_, pPNDigi);
    PNDigi=pPNDigi.product(); 
  }catch ( std::exception& ex ) {
    std::cerr << "Error! can't get the product " << digiCollection_.c_str() << std::endl;
  }
  

  // retrieving electronics mapping
  edm::ESHandle< EcalElectronicsMapping > ecalmapping;
  const EcalElectronicsMapping* TheMapping=0; 
  try{
    c.get< EcalMappingRcd >().get(ecalmapping);
    TheMapping = ecalmapping.product();
  }catch ( std::exception& ex ) {
    std::cerr << "Error! can't get the product EcalMappingRcd"<< std::endl;
  }


  // ====================================
  // Decode Basic DCCHeader Information 
  // ====================================

  for ( EcalRawDataCollection::const_iterator headerItr= DCCHeader->begin();headerItr != DCCHeader->end(); 
        ++headerItr ) {

    int fed = headerItr->fedId();  
    
    if(fed!=_fedid && _fedid!=-999) continue; 
    
    runType=headerItr->getRunType();
    runNum=headerItr->getRunNumber();
    event=headerItr->getLV1();

    dccID=headerItr->getDccInTCCCommand();
    fedID=headerItr->fedId();  


    if( 600+dccID != fedID ) continue;

    // Cut on runType

    if(runType!=EcalDCCHeaderBlock::TESTPULSE_MGPA && runType!=EcalDCCHeaderBlock::TESTPULSE_GAP 
      && runType!=EcalDCCHeaderBlock::TESTPULSE_SCAN_MEM  ) return;
     
  }
  
  // Cut on fedID

  if(fedID!=_fedid && _fedid!=-999) return; 
  
  // Count TP events
  TPEvents++;

  // ======================
  // Decode PN Information
  // ======================
  
  TPNFit * pnfit = new TPNFit();
  pnfit -> init(_nsamplesPN,_firstsamplePN,  _lastsamplePN);
  
  double chi2pn=0;
  double ypnrange[50];
  double dsum=0.;
  double dsum1=0.;
  double bl=0.;
  double val_max=0.;
  int samplemax=0;
  unsigned int k;
  int pnG[50];
  int pngain=0;
  
  std::map <int, std::vector<double> > allPNAmpl;
  std::map <int, std::vector<int> > allPNGain;
  
  for ( EcalPnDiodeDigiCollection::const_iterator pnItr = PNDigi->begin(); pnItr != PNDigi->end(); ++pnItr ) { // Loop on PNs 
    
    EcalPnDiodeDetId pnDetId = EcalPnDiodeDetId((*pnItr).id());

    bool isMemRelevant=false;
    for (unsigned int imem=0;imem<dccMEM.size();imem++){
      if(pnDetId.iDCCId() == dccMEM[imem]) {
        isMemRelevant=true;
      }
    }
    
    // skip mem dcc without relevant data
    if(!isMemRelevant) continue;
    
    for ( int samId=0; samId < (*pnItr).size() ; samId++ ) { // Loop on PN samples  
      pn[samId]=(*pnItr).sample(samId).adc(); 
      pnG[samId]=(*pnItr).sample(samId).gainId();
      
      if(pnG[samId]!=1) std::cout << "PN gain different from 1 for sample "<<samId<< std::endl;
      if (samId==0) pngain=pnG[samId];
      if (samId>0) pngain=TMath::Max(pnG[samId],pngain); 
    }
    
    for(dsum=0.,k=0;k<_presamplePN;k++) {
      dsum+=pn[k];                                                        
    }
    bl=dsum/((double) _presamplePN);
    

    for(val_max=0.,k=0;k<_nsamplesPN;k++) {
      ypnrange[k]=pn[k] - bl;
      
      if(ypnrange[k] > val_max) {
        val_max= ypnrange[k]; samplemax=k; 
      } 
    }
    
    chi2pn = pnfit -> doFit(samplemax,&ypnrange[0]); 
    
    if(chi2pn == 101 || chi2pn == 102 || chi2pn == 103) pnAmpl=0.;
    else pnAmpl= pnfit -> getAmpl();

    allPNAmpl[pnDetId.iDCCId()].push_back(pnAmpl);
    allPNGain[pnDetId.iDCCId()].push_back(pngain); 
    
  }
    
  // ===========================
  // Decode EBDigis Information
  // ===========================
  
  TSFit * pstpfit = new TSFit(_nsamples,650);
  pstpfit -> set_params(_nsamples, _niter, _presample, _samplemin, _samplemax, _timeofmax ,  _chi2max, _firstsample,  _lastsample);
  pstpfit -> init_errmat(10.);

  double chi2=0;
  double yrange[10]; 
  int  adcgain=0;
  int  adcG[10];

  
  if (EBDigi){
    for ( EBDigiCollection::const_iterator digiItr= EBDigi->begin(); digiItr != EBDigi->end(); ++digiItr ) {  // Loop on EB crystals

      EBDetId id_crystal(digiItr->id()) ;
      EBDataFrame df( *digiItr );

      int etaG = id_crystal.ieta() ;  // global
      int phiG = id_crystal.iphi() ;  // global

      int etaL ;  // local
      int phiL ;  // local
      std::pair<int, int> LocalCoord=MEEBGeom::localCoord( etaG , phiG );
      
      etaL=LocalCoord.first ;
      phiL=LocalCoord.second ;
      
      eta = etaG;
      phi = phiG;

      side=MEEBGeom::side(etaG,phiG);
      
      EcalElectronicsId elecid_crystal = TheMapping->getElectronicsId(id_crystal);

      towerID=elecid_crystal.towerId(); 
      int strip=elecid_crystal.stripId();
      int xtal=elecid_crystal.xtalId(); 
      channelID=  5*(strip-1) + xtal-1; // FIXME

  
      int module= MEEBGeom::lmmod(etaG, phiG);
      int iMod = module-1;

      assert( module>=*min_element(modules.begin(),modules.end()) && module<=*max_element(modules.begin(),modules.end()) );


      std::pair<int,int> pnpair=MEEBGeom::pn(module);
      unsigned int MyPn0=pnpair.first;
      unsigned int MyPn1=pnpair.second;
                
      unsigned int channel=MEEBGeom::electronic_channel( etaL, phiL );
      
      if(isFirstChanModFilled[iMod]==0) {
        firstChanMod[iMod]=channel;
        isFirstChanModFilled[iMod]=1;
      }

      iEta[channel]=eta;
      iPhi[channel]=phi;
      iModule[channel]= module ;
      iTowerID[channel]=towerID;
      iChannelID[channel]=channelID;
      idccID[channel]=dccID;
      iside[channel]=side;

  
  
      // get adc samples 
      //====================
      
      for (unsigned int i=0; i< (*digiItr).size() ; ++i ) { 

        EcalMGPASample samp_crystal(df.sample(i));
        adc[i]=samp_crystal.adc() ;  
        adcG[i]=samp_crystal.gainId();   
  
        if (i==0) adcgain=adcG[i];
        if (i>0) adcgain=TMath::Max(adcG[i],adcgain);      
      }
      // Remove pedestal
      //====================
      for(dsum=0.,dsum1=0.,k=0;k<_presample;k++) {
        dsum+=adc[k]; 
        if(k<_presample-1) dsum1+=adc[k];
      }
      
      bl=dsum/((double)_presample);
      
      for(val_max=0.,k=0;k<_nsamples;k++) {
        yrange[k]=adc[k] - bl;
        if(yrange[k] > val_max) {
          val_max= yrange[k]; samplemax=k;
        }
      } 
      
      apdGain=adcgain;
      
      if(allPNAmpl[dccMEM[0]].size()>MyPn0) pnAmpl0=allPNAmpl[dccMEM[0]][MyPn0];
      else pnAmpl0=0;
      if(allPNAmpl[dccMEM[0]].size()>MyPn1) pnAmpl1=allPNAmpl[dccMEM[0]][MyPn1];
      else pnAmpl1=0;

      if(allPNGain[dccMEM[0]].size()>MyPn0) pnGain=allPNGain[dccMEM[0]][MyPn0];
      else pnGain=0;

      // Perform the fit on apd samples
      //================================

      chi2 =  pstpfit -> fit_third_degree_polynomial(&yrange[0],ret_data);
      
      //Retrieve APD amplitude from fit
      //================================

      if( val_max > 100000. || chi2 < 0. || chi2 == 102 ) {
      
        apdAmpl=0;
        apdTime=0;

      }else{
      
        apdAmpl = ret_data[0];
        apdTime = ret_data[1];
        
      }

      trees[channel]->Fill();    
      
    }
    
  } else {

    for ( EEDigiCollection::const_iterator digiItr= EEDigi->begin(); digiItr != EEDigi->end(); ++digiItr ) {  // Loop on EE crystals
      
      EEDetId id_crystal(digiItr->id()) ;
      EEDataFrame df( *digiItr );

      phi = id_crystal.ix() ; 
      eta = id_crystal.iy() ; 

      int iX = (phi-1)/5+1;
      int iY = (eta-1)/5+1;
  
      side=MEEEGeom::side( iX, iY ,iZ); 


      // Recover the TT id and the electronic crystal numbering from EcalElectronicsMapping

      EcalElectronicsId elecid_crystal = TheMapping->getElectronicsId(id_crystal);
    

      towerID=elecid_crystal.towerId();
      channelID=elecid_crystal.channelId()-1;  
      
      int module=MEEEGeom::lmmod( iX, iY );
      if( module>=18 && side==1 ) module+=2;  // Trick to fix endcap specificity
      int iMod = module-1;

      assert( module>=*min_element(modules.begin(),modules.end()) && module<=*max_element(modules.begin(),modules.end()) );

      std::pair<int,int> pnpair=MEEEGeom::pn( module, _fedid ) ; 

      unsigned int MyPn0=pnpair.first;
      unsigned int MyPn1=pnpair.second;

      int hashedIndex=100000*eta+phi;
     
      if( channelMapEE.count(hashedIndex) == 0 ){
        channelMapEE[hashedIndex]=channelIteratorEE;
        channelIteratorEE++;
      }
      
      unsigned int channel=channelMapEE[hashedIndex];

      if(isFirstChanModFilled[iMod]==0) {
        firstChanMod[iMod]=channel;
        isFirstChanModFilled[iMod]=1;
      }
      
      iEta[channel]=eta;
      iPhi[channel]=phi;
      iModule[channel]= module ;
      iTowerID[channel]=towerID;
      iChannelID[channel]=channelID;
      idccID[channel]=dccID;
      iside[channel]=side;

      assert (channel < nCrys);
      
      // Get adc samples
      //====================

      for (unsigned int i=0; i< (*digiItr).size() ; ++i ) { 

        EcalMGPASample samp_crystal(df.sample(i));
        adc[i]=samp_crystal.adc() ;  
        adcG[i]=samp_crystal.gainId();      

        if (i==0) adcgain=adcG[i];
        if (i>0) adcgain=TMath::Max(adcG[i],adcgain); 
      }
      

      // Remove pedestal
      //====================
      for(dsum=0.,dsum1=0.,k=0;k<_presample;k++) {
        dsum+=adc[k]; 
        if(k<_presample-1) dsum1+=adc[k];
      }
      
      bl=dsum/((double)_presample);
      
      for(val_max=0.,k=0;k<_nsamples;k++) {
        yrange[k]=adc[k] - bl;
        if(yrange[k] > val_max) {
          val_max= yrange[k]; samplemax=k;
        }
      } 
      apdGain=adcgain;
      
      int dccMEMIndex=0;
      if(side==1) dccMEMIndex+=2; // Trick to fix endcap specificity
      
      if(allPNAmpl[dccMEM[dccMEMIndex]].size()>MyPn0) pnAmpl0=allPNAmpl[dccMEM[dccMEMIndex]][MyPn0];
      else pnAmpl0=0;
      if(allPNAmpl[dccMEM[dccMEMIndex+1]].size()>MyPn1) pnAmpl1=allPNAmpl[dccMEM[dccMEMIndex+1]][MyPn1];
      else pnAmpl1=0;
      
      if(allPNGain[dccMEM[dccMEMIndex]].size()>MyPn0) pnGain=allPNGain[dccMEM[dccMEMIndex]][MyPn0];
      else pnGain=0;


      // Perform the fit on apd samples
      //=================================

      chi2 =  pstpfit -> fit_third_degree_polynomial(&yrange[0],ret_data);
      
      //Retrieve APD amplitude from fit
      //=================================
      
      if( val_max > 100000. || chi2 < 0. || chi2 == 102 ) {
        
        apdAmpl=0;
        apdTime=0;
        
      }else{
      
        apdAmpl = ret_data[0];
        apdTime = ret_data[1];
        
      }

      trees[channel]->Fill();    
    }
 
  }
  
  
} // end of analyze


//========================================================================
void EcalTestPulseAnalyzer::endJob() {
  //========================================================================
  
  // Don't do anything if there is no events
  if( TPEvents == 0 ){
    
    outFile->Close(); 
    
    // Remove temporary file
    
    std::stringstream del;
    del << "rm " <<rootfile;
    system(del.str().c_str()); 
    
    std::cout << " No TP Events "<< std::endl;
    return;
  }

  std::cout <<  "\n\t+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+" << std::endl;
  std::cout <<    "\t+=+     Analyzing test pulse data: getting APD, PN  +=+" << std::endl;
  
  
  // Create output ntuples:
  
  //std::cout<< "TP Test Name File "<< resfile.c_str() << std::endl;

  resFile = new TFile(resfile.c_str(),"RECREATE");
  
  restrees= new TTree("TPAPD","TPAPD");
  respntrees= new TTree("TPPN","TPPN");

  restrees->Branch( "iphi",        &iphi,        "iphi/I"           );
  restrees->Branch( "ieta",        &ieta,        "ieta/I"           );
  restrees->Branch( "dccID",       &dccID,       "dccID/I"          );
  restrees->Branch( "side",        &side,        "side/I"           );
  restrees->Branch( "towerID",     &towerID,     "towerID/I"        );
  restrees->Branch( "channelID",   &channelID,   "channelID/I"      );
  restrees->Branch( "moduleID",    &moduleID,    "moduleID/I"       );
  restrees->Branch( "flag",        &flag,        "flag/I"           );
  restrees->Branch( "gain",        &gain,        "gain/I"           );
  restrees->Branch( "APD",         &APD,         "APD[6]/D"         );
  
  respntrees->Branch( "pnID",      &pnID,      "pnID/I"         );
  respntrees->Branch( "moduleID",  &moduleID,  "moduleID/I"     );
  respntrees->Branch( "gain",      &gain,      "gain/I"         ); 
  respntrees->Branch( "PN",        &PN,        "PN[6]/D"        ); 
  
  restrees->SetBranchAddress( "iphi",        &iphi       );
  restrees->SetBranchAddress( "ieta",        &ieta       );
  restrees->SetBranchAddress( "dccID",       &dccID      );
  restrees->SetBranchAddress( "side",        &side       );
  restrees->SetBranchAddress( "towerID",     &towerID    );
  restrees->SetBranchAddress( "channelID",   &channelID  );
  restrees->SetBranchAddress( "moduleID",    &moduleID   ); 
  restrees->SetBranchAddress( "flag",        &flag       );  
  restrees->SetBranchAddress( "gain",        &gain       );  
  restrees->SetBranchAddress( "APD",         APD         );  
  
  respntrees->SetBranchAddress( "pnID",      &pnID     );
  respntrees->SetBranchAddress( "moduleID",  &moduleID );
  respntrees->SetBranchAddress( "gain",      &gain     ); 
  respntrees->SetBranchAddress( "PN",        PN        ); 
  
  

  TMom *APDAnal[1700][10];
  TMom *PNAnal[9][2][10];


  for (unsigned int iMod=0;iMod<nMod;iMod++){
    for (unsigned int ich=0;ich<2;ich++){
      for (unsigned int ig=0;ig<nGainPN;ig++){
        PNAnal[iMod][ich][ig]=new TMom();
      }
    }
  }

  for (unsigned int iCry=0;iCry<nCrys;iCry++){ // Loop on data trees (ie on cristals)

    for(unsigned int iG=0;iG<nGainAPD;iG++){
      APDAnal[iCry][iG]=new TMom();
    }


    
    // Define submodule and channel number inside the submodule (as Patrice)
    
    unsigned int iMod=iModule[iCry]-1;
  
    moduleID=iMod+1;    
    if( moduleID>=20 ) moduleID-=2;  // Trick to fix endcap specificity
    
    Long64_t nbytes = 0, nb = 0;
    for (Long64_t jentry=0; jentry< trees[iCry]->GetEntriesFast();jentry++) { 
      nb = trees[iCry]->GetEntry(jentry);   nbytes += nb; 
      
      // PN Means and RMS 

      if( firstChanMod[iMod]==iCry ){ 
        PNAnal[iMod][0][pnGain]->addEntry(pnAmpl0);
        PNAnal[iMod][1][pnGain]->addEntry(pnAmpl1);
      }
      
      // APD means and RMS
      
      APDAnal[iCry][apdGain]->addEntry(apdAmpl);
      
    }
    
    if (trees[iCry]->GetEntries()<10){
      flag=-1;
      for (int j=0;j<6;j++){
        APD[j]=0.0;
      }
    }
    else flag=1;
    
    iphi=iPhi[iCry];
    ieta=iEta[iCry];
    dccID=idccID[iCry];
    side=iside[iCry];
    towerID=iTowerID[iCry];
    channelID=iChannelID[iCry];

    for (unsigned int ig=0;ig<nGainAPD;ig++){
      
      APD[0]= APDAnal[iCry][ig]->getMean();
      APD[1]= APDAnal[iCry][ig]->getRMS();
      APD[2]= APDAnal[iCry][ig]->getM3();
      APD[3]= APDAnal[iCry][ig]->getNevt();
      APD[4]= APDAnal[iCry][ig]->getMin();
      APD[5]= APDAnal[iCry][ig]->getMax();
      gain=ig;
      
      // Fill APD tree
      
      restrees->Fill(); 
      
    }
  }
  
  // Get final results for PN and PN/PN
  
  for (unsigned int ig=0;ig<nGainPN;ig++){
    for (unsigned int iMod=0;iMod<nMod;iMod++){
      for (int ch=0;ch<2;ch++){
        
        pnID=ch;
        moduleID=iMod;
        if( moduleID>=20 ) moduleID-=2;  // Trick to fix endcap specificity

        PN[0]= PNAnal[iMod][ch][ig]->getMean();
        PN[1]= PNAnal[iMod][ch][ig]->getRMS();
        PN[2]= PNAnal[iMod][ch][ig]->getM3();
        PN[3]= PNAnal[iMod][ch][ig]->getNevt();
        PN[4]= PNAnal[iMod][ch][ig]->getMin();
        PN[5]= PNAnal[iMod][ch][ig]->getMax();
        gain=ig;
        
        // Fill PN tree
        respntrees->Fill();
        
      }
    }
  }
  
  outFile->Close(); 

  // Remove temporary file

  std::stringstream del;
  del << "rm " <<rootfile;
  system(del.str().c_str()); 


  // Save final results 

  restrees->Write();
  respntrees->Write();
  resFile->Close(); 
  
  std::cout <<    "\t+=+    ...................................... done  +=+" << std::endl;
  std::cout <<    "\t+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+=+" << std::endl;
}


DEFINE_FWK_MODULE(EcalTestPulseAnalyzer);